Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(88)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(298)		   GeneChip
(27,654)		   Tiling Array
(5,201)		   cDNA Array
(24,041)		   Oligo Array
(30,982)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(4,835)		   Other
(117)		   All
(93,301)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(23)		   young aerial structure
(1)		   root
(8)		   meristem/growing tissue
(7)		   flower/sexual organ
(3)		   seed/fruit/grain
(3)		   pooled
(21)		   unclassified
(22)		   all
(88)		  
1   |   2   |   3   |   4   |   5      »      
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM8941 PtaedaCrownXylem 27,398 University of Georgia 2003-08-08 [SAGE NlaIII] SAGE:10:NlaIII:Pinus taeda (GPL385) SAGE Pinus taeda
Pinus taeda		 other adult aerial structure Xylem
2 GSM8940 PtaedaBaseXylem 25,984 University of Georgia 2003-08-08 [SAGE NlaIII] SAGE:10:NlaIII:Pinus taeda (GPL385) SAGE Pinus taeda
Pinus taeda		 other adult aerial structure Xylem
3 GSM874210 T146 82,297 浙江大学生物所 2012-02-12 [SAGE NlaIII] SAGE:17:NlaIII:Magnaporthe grisea (GPL15220) SAGE Magnaporthe grisea
Magnaporthe grisea		 unclassified source_name:T146- Tag_counts title:T146
4 GSM874209 G11 87,510 浙江大学生物所 2012-02-12 [SAGE NlaIII] SAGE:17:NlaIII:Magnaporthe grisea (GPL15220) SAGE Magnaporthe grisea
Magnaporthe grisea		 unclassified source_name:Guy11-Tag_counts title:G11
5 GSM87321 Lentinula edodes-mature fruit body after spore formation 4,167 The Chinese University of Hong Kong 2005-12-11 [SAGE NlaIII] SAGE:10:NlaIII:Lentinula edodes (GPL1457) SAGE Lentinula edodes
Lentinula edodes		 pooled Lentinula edodes-mature fruit body after spore formation
6 GSM87320 Lentinula edodes-mature fruit body before sporulation 2,679 The Chinese University of Hong Kong 2005-12-11 [SAGE NlaIII] SAGE:10:NlaIII:Lentinula edodes (GPL1457) SAGE Lentinula edodes
Lentinula edodes		 unclassified source_name:Strain L54 of Lentinula edodes (Shiitake mushroom) title:Lentinula edodes-mature fruit body before sporulation description:To analyze gene expression profiles at different developmental stages and identify differentially expressed genes that may relate to sporulation by comparing transcriptomes of mature fruit body before and after sporulation.
7 GSM8647 AtRoot14DayMSTNT 12,005 University of Georgia 2003-07-25 [SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) SAGE Arabidopsis thaliana
Arabidopsis thaliana		 root Roots
8 GSM8646 AtRoot14DayMSControl 12,721 University of Georgia 2003-07-25 [SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) SAGE Arabidopsis thaliana
Arabidopsis thaliana		 root Seedling roots
9 GSM770 UV-B treated Arabidopsis thaliana 4,202 Samuel Roberts Noble Foundation 2001-12-04 [SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) SAGE Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Arabidopsis (Col) title:UV-B treated Arabidopsis thaliana description:10-day-old Arabidopsis thaliana (Col) was treated with 8000 J M-2 UV-B. After 24 hr, total RNA was isolated using TRIzol reagent. mRNA was isolated using oligo-dT beads.
10 GSM769 Arabidopsis thaliana seedlings 3,583 Samuel Roberts Noble Foundation 2001-12-04 [SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) SAGE Arabidopsis thaliana
Arabidopsis thaliana		 young aerial structure Arabidopsis thaliana seedlings
11 GSM768 Gamma-ray treated Arabidopsis thaliana 2,641 Samuel Roberts Noble Foundation 2001-12-04 [SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) SAGE Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Arabidopsis (Col) title:Gamma-ray treated Arabidopsis thaliana description:10-day-old Arabidopsis thaliana (Col) was treated with 218Gy of Gamma ray. After 24 hr, total RNA was isolated using TRIzol reagent. mRNA was isolated using oligo-dT beads.
12 GSM625363 Lentinula edodes-mature fruit body after spore formation (LongSAGE) 510 The Chinese University of Hong Kong 2010-11-18 [SAGE NlaIII] SAGE:15:NlaIII:Lentinula edodes (GPL11229) SAGE Lentinula edodes
Lentinula edodes		 pooled Lentinula edodes-mature fruit body after spore formation (LongSAGE)
13 GSM625362 Lentinula edodes-mature fruit body before sporulation (LongSAGE) 378 The Chinese University of Hong Kong 2010-11-18 [SAGE NlaIII] SAGE:15:NlaIII:Lentinula edodes (GPL11229) SAGE Lentinula edodes
Lentinula edodes		 unclassified source_name:Strain L54 of Lentinula edodes (Shiitake mushroom) title:Lentinula edodes-mature fruit body before sporulation (LongSAGE) description:To facilitate comparison of LongSAGE and SAGE data in GEO, LongSAGE tags (15bp) were trimmed to become 10bp and uploaded in previous submission (GSM87320, GSM87321). The current submission are actual LongSAGE experimental data without any extrapolation from SAGE data.
14 GSM60893 leaf_greenhouse_rep1 5,292 Katholieke Universiteit Leuven 2005-06-14 [SAGE NlaIII] SAGE:22:NlaIII:Musa acuminata (GPL2542) SAGE Musa acuminata
Musa acuminata		 leaf youngest_unfurled_leaf_greenhouse
15 GSM60095 AtRoot14DayMSRDX 12,122 University of Georgia 2005-06-02 [SAGE NlaIII] SAGE:10:NlaIII:Arabidopsis thaliana (GPL25) SAGE Arabidopsis thaliana
Arabidopsis thaliana		 root Roots
16 GSM535675 Aureococcus anophagefferens, -N (nitrogen deficient cells) 14,958 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens		 unclassified source_name:Aureococcus anophagefferens nitrogen-deficient cells harvested at onset of staitionary phase of growth title:Aureococcus anophagefferens, -N (nitrogen deficient cells) description:n/a
17 GSM535671 Aureococcus anophagefferens, -P (phosphorus deficient cells) 12,830 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens		 unclassified source_name:Aureococcus anophagefferens phosphorus-deficient cells harvested at onset of stationary phase title:Aureococcus anophagefferens, -P (phosphorus deficient cells) description:N/A
18 GSM535670 Aureococcus anophagefferens, Control (nutrient replete growing cells) 17,895 Woods Hole Oceanographic Institution 2010-04-21 [SAGE NlaIII] SAGE:17:NlaIII:Aureococcus anophagefferens (GPL10346) SAGE Aureococcus anophagefferens
Aureococcus anophagefferens		 unclassified source_name:Aureococcus anophagefferens replete growing cells harvested mid-exponential phase of growth title:Aureococcus anophagefferens, Control (nutrient replete growing cells) description:n/a
19 GSM414747 tag of rice callus 717,904 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE Oryza sativa
Oryza sativa		 callus callus of rice
20 GSM414746 tag of rice booting panicle 793,637 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE Oryza sativa
Oryza sativa		 other flower/sexual organ tag of rice booting panicle
1   |   2   |   3   |   4   |   5      »      
DBCLS | Site Policies | Contact Us