Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,712)		   Tiling Array
(694)		   cDNA Array
(1,562)		   Oligo Array
(1,630)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(777)		   Other
(18)		   All
(6,479)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole genome tiling arrays (GSE13584) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) Max Planck Institute for Developmental Biology 2008-11-13 Arabidopsis thaliana
Arabidopsis thaliana		 241,204,080
(6,184,720 x 39) 		39 by_platform
by_series
2 CG Methylation of Col, Van and reciprocal hybrids using HpaII and MspI digestion (GSE8890) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2007-08-28 Arabidopsis thaliana
Arabidopsis thaliana		 197,911,040
(6,184,720 x 32) 		32 by_platform
by_series
3 Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome (GSE9317) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) The Salk Institute 2007-10-14 Arabidopsis thaliana
Arabidopsis thaliana		 197,911,040
(6,184,720 x 32) 		32 by_platform
by_series
4 High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (mCIP, MBD) (GSE5094) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2006-06-16 Arabidopsis thaliana
Arabidopsis thaliana		 148,433,280
(6,184,720 x 24) 		24 by_platform
by_series
5 Histone H3 modifications ChIP on chip (GSE7907) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) Michigan State University 2007-05-25 Arabidopsis thaliana
Arabidopsis thaliana		 148,433,280
(6,184,720 x 24) 		24 by_platform
by_series
6 eQTL mapping in 57 F1 diversity lines of Arabidopsis thaliana (GSE23912) [Tiling Array] Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 2 (GPL10855) University of Chicago 2010-08-31 Arabidopsis thaliana
Arabidopsis thaliana		 137,818,533
(2,417,869 x 57) 		57 by_platform
by_series
7 Allele specific expression in Arabidopsis thaliana Col-0 x Van-0 F1 hybrids (GSE16520) [Tiling Array] Arabidopsis thaliana SNP-tiling array AtSNPtile ver. 1 (GPL8655) University of Chicago 2009-06-09 Arabidopsis thaliana
Arabidopsis thaliana		 104,674,083
(2,434,281 x 43) 		43 by_platform
by_series
8 Genomic hybridization of Col, Van and reciprocal hybrids (GSE13620) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2008-11-16 Arabidopsis thaliana
Arabidopsis thaliana		 98,955,520
(6,184,720 x 16) 		16 by_platform
by_series
9 Gene expression of Col, Van and reciprocal hybrids (GSE8891) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2007-08-28 Arabidopsis thaliana
Arabidopsis thaliana		 98,955,520
(6,184,720 x 16) 		16 by_platform
by_series
10 Methylome analysis of 123 epiRILs, WT and ddm1 mutant aerial part (GSE37284) [Tiling Array] Custom NimbleGen A. thaliana ChIP-chip tiling array [HD2.3X] (GPL11005) IBENS - CNRS UMR8197 - INSERM U1024 2012-04-16 Arabidopsis thaliana
Arabidopsis thaliana		 88,915,000
(711,320 x 125) 		125 by_platform
by_series
11 Dual roles of the nuclear cap binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis (GSE11043) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) Max Planck Institute for Developmental Biology 2008-04-03 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
12 Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (GSE13814) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California San Diego 2008-12-03 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
13 Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (GSE13814) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) University of California San Diego 2008-12-03 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
14 Trimethylation of histone H3 lysine27 (H3K27me3) in Arabidopsis (GSE7093) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2007-02-21 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
15 Genome-Wide Expression Profiling of the Arabidopsis Female Gametophyte Identifies Families of Small, Secreted Proteins (GSE8392) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2007-07-05 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
16 High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (polyA RNA) (GSE5074) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) The Salk Institute 2006-06-14 Arabidopsis thaliana
Arabidopsis thaliana		 55,662,480
(6,184,720 x 9) 		9 by_platform
by_series
17 High Resolution Mapping and Functional Analysis of the Methylome in Arabidopsis (polyA RNA) (GSE5074) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) The Salk Institute 2006-06-14 Arabidopsis thaliana
Arabidopsis thaliana		 55,662,480
(6,184,720 x 9) 		9 by_platform
by_series
18 A link between RNA metabolism and silencing affecting Arabidopsis development (GSE11070) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) Salk-Institute 2008-04-04 Arabidopsis thaliana
Arabidopsis thaliana		 49,477,760
(6,184,720 x 8) 		8 by_platform
by_series
19 The Arabidopsis chromodomain-containing LHP1 colocalizes with histone H3 lysine27 trimethylation (GSE8169) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California, Los Angeles 2007-06-18 Arabidopsis thaliana
Arabidopsis thaliana		 49,477,760
(6,184,720 x 8) 		8 by_platform
by_series
20 Euchromatic histone modifications associated with rice centromeres (GSE29597) [Tiling Array] NimbleGen Custom Rice Centromere Tiling Array (design:080925/080227) (GPL13660) UW-Madison 2011-05-27 Oryza sativa
Oryza sativa		 49,473,864
(687,137 x 72) 		72 by_platform
by_series
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