Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(547)
  Primates
(8)
  Rodents
(358)
  Mammals
(33)
  Vertebrates
(31)
  Invertebrates
(73)
  Plants
(202)
  Bacteria
(116)
  Viruses
(0)
  Phages
(0)
  Unclassified
(9)
  All
(1,379)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(40)
  Tiling Array
(17)
  cDNA Array
(74)
  Oligo Array
(62)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(8)
  Other
(1)
  All
(202)
 
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole genome tiling arrays (GSE13584) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) ZMBP - University of Tuebingen 2008-11-13 Arabidopsis thaliana
Arabidopsis thaliana
241,204,080
(6,184,720 x 39)
39 by_platform
by_series
2 Genomic hybridization of Col, Van and reciprocal hybrids (GSE13620) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2008-11-16 Arabidopsis thaliana
Arabidopsis thaliana
98,955,520
(6,184,720 x 16)
16 by_platform
by_series
3 Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (GSE13814) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California San Diego 2008-12-03 Arabidopsis thaliana
Arabidopsis thaliana
74,216,640
(6,184,720 x 12)
12 by_platform
by_series
4 Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (GSE13814) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) University of California San Diego 2008-12-03 Arabidopsis thaliana
Arabidopsis thaliana
74,216,640
(6,184,720 x 12)
12 by_platform
by_series
5 Genome-wide Analysis of Mono-, Di- and Trimethylation of Histone H3 Lysine 4 in Arabidopsis thaliana (GSE13613) [Tiling Array] Arabidopsis thaliana genome tiling 1.0R array (GPL7639) UCLA 2008-11-14 Arabidopsis thaliana
Arabidopsis thaliana
17,257,194
(2,876,199 x 6)
6 by_platform
by_series
6 DIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5 (GSE13751) [Tiling Array] NimbleGen 385k S. cerevisiae 32bp tiling array (GPL7699) UNC-Chapel Hill 2008-11-26 Saccharomyces cerevisiae
Saccharomyces cerevisiae
5,301,576
(378,684 x 14)
14 by_platform
by_series
7 Atf1-mediated active gene response to H2O2 challenge. (GSE13053) [Tiling Array] S. pombe Nimblegen tiling array (GPL6279) Genome Institute of Singapore 2008-10-06 Schizosaccharomyces pombe
Schizosaccharomyces pombe
3,052,192
(381,524 x 8)
8 by_platform
by_series
8 Cryptic Transcription in a set2∆ in Saccharomyces cerevisiae (GSE13310) [Tiling Array] NimbleGen Saccharomyces cerevisiae Whole Genome Tiling Array (385K) (GPL7511) UNC-Chapel Hill 2008-10-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae
1,159,581
(386,527 x 3)
3 by_platform
by_series
9 Mechanisms that specify promoter nucleosome location and identity (GSE13446) [Tiling Array] Madhani Saccharomyces cerevisiae tiling 16429 (GPL7550) University of California, San Francisco 2008-11-03 Saccharomyces cerevisiae
Saccharomyces cerevisiae
952,882
(16,429 x 58)
58 by_platform
by_series
10 Cohesin localisation along fission yeast chromosomes delineates conserved mechanisms of binding (GSE13517) [Tiling Array] S_pombea520106F (GPL1281) NCI (NIH) 2008-11-07 Schizosaccharomyces pombe
Schizosaccharomyces pombe
461,220
(23,061 x 20)
20 by_platform
by_series
11 Specific acetylase-deacetylase balance controls stress adaptation by modulating global histone H3K14 acetylation. (GSE13790) [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) Karolinska Institute 2008-12-02 Schizosaccharomyces pombe
Schizosaccharomyces pombe
8
(0 x 8)
8 by_platform
by_series
12 Expression data for the mom1-2 mutant of Arabidopsis (GSE13092) [Tiling Array] [At35b_MF] Affymetrix Arabidopsis Tiling 1.0F Array (GPL10978) RIKEN 2008-10-07 Arabidopsis thaliana
Arabidopsis thaliana
6
(0 x 6)
6 by_platform
by_series
13 Expression data for the mom1-2 mutant of Arabidopsis (GSE13092) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) RIKEN 2008-10-07 Arabidopsis thaliana
Arabidopsis thaliana
6
(0 x 6)
6 by_platform
by_series
14 Interspecies hybridization between Arabidopsis thaliana and Arabidopsis arenosa (GSE14090) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) University of Nebraska 2008-12-22 Arabidopsis arenosa x Arabidopsis thaliana
Arabidopsis arenosa x Arabidopsis thaliana
6
(0 x 6)
3 3 by_platform
by_series
15 Bisulfite Methylation Profiling (BiMP) analysis of met1-3 epigenetic Recombinant Inbred Lines (epiRILs) (GSE13438) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) Universite de Geneve 2008-11-03 Arabidopsis thaliana
Arabidopsis thaliana
5
(0 x 5)
3 2 by_platform
by_series
16 Genome-wide GL3 and GL1 binding sites in Arabidopsis thaliana (GSE13090) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) The Ohio State University 2008-10-07 Arabidopsis thaliana
Arabidopsis thaliana
2
(0 x 2)
2 by_platform
by_series
17 Distinct differences in chromatin structure at telomeric X- and Y-elements in budding yeast. (GSE13615) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Gothenburg University 2008-11-14 Saccharomyces cerevisiae
Saccharomyces cerevisiae
2
(0 x 2)
1 1 by_platform
by_series