Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,971)
  Primates
(89)
  Rodents
(7,954)
  Mammals
(744)
  Vertebrates
(774)
  Invertebrates
(2,181)
  Plants
(2,767)
  Bacteria
(1,374)
  Viruses
(236)
  Phages
(0)
  Unclassified
(665)
  All
(45,839)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(945)
  Tiling Array
(251)
  cDNA Array
(422)
  Oligo Array
(955)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(192)
  Other
(0)
  All
(2,767)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(39)
  young aerial structure
(2)
  root
(12)
  meristem/growing tissue
(0)
  flower/sexual organ
(20)
  seed/fruit/grain
(78)
  pooled
(33)
  unclassified
(67)
  all
(251)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM694157 untagged wild type sample replicate #1 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:untagged wild type sample replicate #1 whole cell extract title:untagged wild type sample replicate #1 description:untagged wild type sample replicate #1 Median of Ratios (635/532)
2 GSM694158 untagged wild type sample replicate #2 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:untagged wild type sample replicate #2 whole cell extract title:untagged wild type sample replicate #2 description:untagged wild type sample replicate #2 Median of Ratios (635/532)
3 GSM694159 sample #1 from strain with tagged Gat201 ORF 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:sample #1 from strain with tagged Gat201 ORF whole cell extract title:sample #1 from strain with tagged Gat201 ORF description:sample #1 from strain with tagged Gat201 ORF Median of Ratios (635/532)
4 GSM694160 sample #2 from strain with tagged Gat201 ORF 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:sample #2 from strain with tagged Gat201 ORF whole cell extract title:sample #2 from strain with tagged Gat201 ORF description:sample #2 from strain with tagged Gat201 ORF Median of Ratios (635/532)
5 GSM665151 organism part name: 24H_Germinating Seed - rep1 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
other seed/fruit/grain fruit (organism part name: 24H_Germinating Seed)
6 GSM665152 organism part name: 24H_Germinating Seed - rep2 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
other seed/fruit/grain fruit (organism part name: 24H_Germinating Seed)
7 GSM665153 organism part name: 24H_Germinating Seed - rep3 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
other seed/fruit/grain fruit (organism part name: 24H_Germinating Seed)
8 GSM665154 organism part name: 6DAS_GH_Coleoptile - rep1 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root 6DAS_GH_Coleoptile::Coleoptile (GH)::6DAS::This tissue was collected from greenhouse grown plants. Coleoptiles were harvested from the same plants that were used for collection of 6DAS_GH_Primary Root.
9 GSM665155 organism part name: 6DAS_GH_Coleoptile - rep2 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root 6DAS_GH_Coleoptile::Coleoptile (GH)::6DAS::This tissue was collected from greenhouse grown plants. Coleoptiles were harvested from the same plants that were used for collection of 6DAS_GH_Primary Root.
10 GSM665156 organism part name: 6DAS_GH_Coleoptile - rep3 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root 6DAS_GH_Coleoptile::Coleoptile (GH)::6DAS::This tissue was collected from greenhouse grown plants. Coleoptiles were harvested from the same plants that were used for collection of 6DAS_GH_Primary Root.
11 GSM665157 organism part name: 6DAS_GH_Primary Root - rep1 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: 6DAS_GH_Primary Root)
12 GSM665158 organism part name: 6DAS_GH_Primary Root - rep2 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: 6DAS_GH_Primary Root)
13 GSM665159 organism part name: 6DAS_GH_Primary Root - rep3 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: 6DAS_GH_Primary Root)
14 GSM665160 organism part name: V1_GH_Primary Root - rep1 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: V1_GH_Primary Root)
15 GSM665161 organism part name: V1_GH_Primary Root - rep2 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: V1_GH_Primary Root)
16 GSM665162 organism part name: V1_GH_Primary Root - rep3 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: V1_GH_Primary Root)
17 GSM665163 organism part name: VE_Whole Seedling - rep1 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
pooled shoot system (organism part name: VE_Whole Seedling)
18 GSM665164 organism part name: VE_Whole Seedling - rep2 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
pooled shoot system (organism part name: VE_Whole Seedling)
19 GSM665165 organism part name: VE_Whole Seedling - rep3 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
pooled shoot system (organism part name: VE_Whole Seedling)
20 GSM665166 organism part name: VE_Primary Root - rep1 92,439 Iowa State University 2011-02-01 [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) RNA Zea mays
Zea mays
root primary root (organism part name: VE_Primary Root)
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