Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(28,971)
  Primates
(89)
  Rodents
(7,954)
  Mammals
(744)
  Vertebrates
(774)
  Invertebrates
(2,181)
  Plants
(2,767)
  Bacteria
(1,374)
  Viruses
(236)
  Phages
(0)
  Unclassified
(665)
  All
(45,839)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(945)
  Tiling Array
(251)
  cDNA Array
(422)
  Oligo Array
(955)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(192)
  Other
(0)
  All
(2,767)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(39)
  young aerial structure
(2)
  root
(12)
  meristem/growing tissue
(0)
  flower/sexual organ
(20)
  seed/fruit/grain
(78)
  pooled
(33)
  unclassified
(67)
  all
(251)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM697666 BrdUIP_Wild_60minHU 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:BrdU IPed from BrdU-incorporated DNA Input DNA from Metaphase arrested cells title:BrdUIP_Wild_60minHU
2 GSM697667 Mcm4ChIP_Wild_60minHU 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 3Flag-fused Mcm4 Input DNA from Metaphase arrested cells title:Mcm4ChIP_Wild_60minHU
3 GSM697668 Mrc1ChIP_Wild_20min 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 5Flag-fused Mrc1 Input DNA from Metaphase arrested cells title:Mrc1ChIP_Wild_20min
4 GSM697669 Mcm4ChIP_hsk1ts_240minHU 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 3Flag-fused Mcm4 and hsk1-89 Input DNA from Metaphase arrested cells title:Mcm4ChIP_hsk1ts_240minHU
5 GSM697670 Cdc45ChIP_Wild_30min 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 3Flag-fused Cdc45 Input DNA from Metaphase arrested cells title:Cdc45ChIP_Wild_30min
6 GSM697671 Cdc45ChIP_hsk1ts_30min 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 3Flag-fused Cdc45 and hsk1-89 Input DNA from Metaphase arrested cells title:Cdc45ChIP_hsk1ts_30min
7 GSM697672 Mrc1ChIP_hsk1ts_30min 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 5Flag-fused Mrc1 and hsk1-89 Input DNA from Metaphase arrested cells title:Mrc1ChIP_hsk1ts_30min
8 GSM697673 Mrc1ChIP_hsk1ts_30min_2 0 Tokyo Metropolitan Institute of Medical Science 2011-03-25 [Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715) genomic Schizosaccharomyces pombe
Schizosaccharomyces pombe
unclassified source_name:Flag ChIPed from the strain expressing 5Flag-fused Mrc1 and hsk1-89 Input DNA from Metaphase arrested cells title:Mrc1ChIP_hsk1ts_30min_2
9 GSM696450 No-FLAG control 0 CABIMER, Universidad de Sevilla-CSIC 2011-03-23 [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:FLAG ChIP DNA from SY2201, asynchronous culture Input DNA from SY2201, asynchronous culture title:No-FLAG control
10 GSM696451 No-PK control 0 CABIMER, Universidad de Sevilla-CSIC 2011-03-23 [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) genomic Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:PK ChIP DNA from SY2080, asynchronous culture Input DNA from SY2080, asynchronous culture title:No-PK control
11 GSM694157 untagged wild type sample replicate #1 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:untagged wild type sample replicate #1 whole cell extract title:untagged wild type sample replicate #1 description:untagged wild type sample replicate #1 Median of Ratios (635/532)
12 GSM694158 untagged wild type sample replicate #2 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:untagged wild type sample replicate #2 whole cell extract title:untagged wild type sample replicate #2 description:untagged wild type sample replicate #2 Median of Ratios (635/532)
13 GSM694159 sample #1 from strain with tagged Gat201 ORF 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:sample #1 from strain with tagged Gat201 ORF whole cell extract title:sample #1 from strain with tagged Gat201 ORF description:sample #1 from strain with tagged Gat201 ORF Median of Ratios (635/532)
14 GSM694160 sample #2 from strain with tagged Gat201 ORF 243,504 UC San Francisco 2011-03-21 [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) genomic Cryptococcus neoformans
Cryptococcus neoformans
unclassified source_name:sample #2 from strain with tagged Gat201 ORF whole cell extract title:sample #2 from strain with tagged Gat201 ORF description:sample #2 from strain with tagged Gat201 ORF Median of Ratios (635/532)
15 GSM694043 LFYGR_IPvsInput 0 University of Pennsylvania 2011-03-21 [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) genomic Arabidopsis thaliana
Arabidopsis thaliana
young aerial structure LFY-GR ChIP DNA from 9-day-old seedlings LFY-GR Input DNA from 9-day-old seedlings
16 GSM694044 WT_IPvsInput (negative control) 0 University of Pennsylvania 2011-03-21 [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) genomic Arabidopsis thaliana
Arabidopsis thaliana
young aerial structure WT ChIP DNA from 9-day-old seedlings WT Input DNA from 9-day-old seedlings
17 GSM694045 WT_IPvsInput 0 University of Pennsylvania 2011-03-21 [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) genomic Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ ChIP DNA from 19-day-old WT inflorescences using LFY antibody WT Input DNA from 19-day-old inflorescences
18 GSM694046 lfy6_IPvsInput (negative control) 0 University of Pennsylvania 2011-03-21 [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) genomic Arabidopsis thaliana
Arabidopsis thaliana
other flower/sexual organ ChIP DNA from 19-day-old lfy6 inflorescences using LFY antibody lfy6 Input DNA from 19-day-old inflorescences
19 GSM686856 BY4741 NaCl 30 min rep 1 6,914 University of Wisconsin: Madison 2011-03-07 [Tiling Array] UWAPG GPL9529 Saccharomyces cerevisiae v1.0 [ORF centered] (GPL13254) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:BY4741 grown 7 doublings, exposed to 30 min 0.7M NaCl, and collected BY4741 grown 7 doublings and collected title:BY4741 NaCl 30 min rep 1
20 GSM686857 BY4741 NaCl 30 min rep 2 6,914 University of Wisconsin: Madison 2011-03-07 [Tiling Array] UWAPG GPL9529 Saccharomyces cerevisiae v1.0 [ORF centered] (GPL13254) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:BY4741 grown 7 doublings, exposed to 30 min 0.7M NaCl, and collected BY4741 grown 7 doublings and collected title:BY4741 NaCl 30 min rep 2
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