Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(26,601)

Invertebrates
(2,181)

Plants
(2,707)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(933)

Tiling Array
(209)

cDNA Array
(422)

Oligo Array
(951)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(192)

Other
(0)

All
(2,707)

brain
(0)

blood
(0)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(39)

young aerial structure
(2)

root
(12)

meristem/growing tissue
(0)

flower/sexual organ
(20)

seed/fruit/grain
(78)

pooled
(33)

unclassified
(25)

all
(209)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM697666	BrdUIP_Wild_60minHU	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:BrdU IPed from BrdU-incorporated DNA Input DNA from Metaphase arrested cells title:BrdUIP_Wild_60minHU
2	GSM697667	Mcm4ChIP_Wild_60minHU	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 3Flag-fused Mcm4 Input DNA from Metaphase arrested cells title:Mcm4ChIP_Wild_60minHU
3	GSM697668	Mrc1ChIP_Wild_20min	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 5Flag-fused Mrc1 Input DNA from Metaphase arrested cells title:Mrc1ChIP_Wild_20min
4	GSM697669	Mcm4ChIP_hsk1ts_240minHU	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 3Flag-fused Mcm4 and hsk1-89 Input DNA from Metaphase arrested cells title:Mcm4ChIP_hsk1ts_240minHU
5	GSM697670	Cdc45ChIP_Wild_30min	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 3Flag-fused Cdc45 Input DNA from Metaphase arrested cells title:Cdc45ChIP_Wild_30min
6	GSM697671	Cdc45ChIP_hsk1ts_30min	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 3Flag-fused Cdc45 and hsk1-89 Input DNA from Metaphase arrested cells title:Cdc45ChIP_hsk1ts_30min
7	GSM697672	Mrc1ChIP_hsk1ts_30min	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 5Flag-fused Mrc1 and hsk1-89 Input DNA from Metaphase arrested cells title:Mrc1ChIP_hsk1ts_30min
8	GSM697673	Mrc1ChIP_hsk1ts_30min_2	0	Tokyo Metropolitan Institute of Medical Science	2011-03-25	[Tiling Array] [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array (GPL7715)	genomic	Schizosaccharomyces pombe	unclassified	source_name:Flag ChIPed from the strain expressing 5Flag-fused Mrc1 and hsk1-89 Input DNA from Metaphase arrested cells title:Mrc1ChIP_hsk1ts_30min_2
9	GSM675134	WT H3K4ac on H3 exp1	0	UniversitÃƒÂ© de MontrÃƒÂ©al	2011-02-14	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:H3K4ac (home antibody) ChIP DNA from WT (BY4741) yeast cells non modified H3 (Abcam 1791) ChIP DNA from WT (BY4741) yeast cells title:WT H3K4ac on H3 exp1
10	GSM675135	WT H3K4me3 on H3 exp1	0	UniversitÃƒÂ© de MontrÃƒÂ©al	2011-02-14	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:H3K4me3 (Abcam ab8580) ChIP DNA from WT (BY4741) yeast cells non modified H3 (Abcam 1791) ChIP DNA from WT (BY4741) yeast cells title:WT H3K4me3 on H3 exp1
11	GSM675136	WT H3K4ac on H3 exp2	0	UniversitÃƒÂ© de MontrÃƒÂ©al	2011-02-14	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:H3K4ac (home antibody) ChIP DNA from WT (BY4741) yeast cells non modified H3 (Abcam 1791) ChIP DNA from WT (BY4741) yeast cells title:WT H3K4ac on H3 exp2
12	GSM675137	set1D H3K4ac on H3 exp2	0	UniversitÃƒÂ© de MontrÃƒÂ©al	2011-02-14	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:H3K4ac (home antibody) ChIP DNA from set1D yeast cells non modified H3 (Abcam 1791) ChIP DNA from set1D yeast cells title:set1D H3K4ac on H3 exp2
13	GSM675138	H3K4ac set1D on WT exp2	0	UniversitÃƒÂ© de MontrÃƒÂ©al	2011-02-14	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:H3K4ac (home antibody) ChIP DNA from set1D yeast cells H3K4ac (home antibody) ChIP DNA from WT (BY4741) yeast cells title:H3K4ac set1D on WT exp2
14	GSM696450	No-FLAG control	0	CABIMER, Universidad de Sevilla-CSIC	2011-03-23	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:FLAG ChIP DNA from SY2201, asynchronous culture Input DNA from SY2201, asynchronous culture title:No-FLAG control
15	GSM696451	No-PK control	0	CABIMER, Universidad de Sevilla-CSIC	2011-03-23	[Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250)	genomic	Saccharomyces cerevisiae	unclassified	source_name:PK ChIP DNA from SY2080, asynchronous culture Input DNA from SY2080, asynchronous culture title:No-PK control
16	GSM694043	LFYGR_IPvsInput	0	University of Pennsylvania	2011-03-21	[Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977)	genomic	Arabidopsis thaliana	young aerial structure	LFY-GR ChIP DNA from 9-day-old seedlings LFY-GR Input DNA from 9-day-old seedlings
17	GSM694044	WT_IPvsInput (negative control)	0	University of Pennsylvania	2011-03-21	[Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977)	genomic	Arabidopsis thaliana	young aerial structure	WT ChIP DNA from 9-day-old seedlings WT Input DNA from 9-day-old seedlings
18	GSM694045	WT_IPvsInput	0	University of Pennsylvania	2011-03-21	[Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977)	genomic	Arabidopsis thaliana	other flower/sexual organ	ChIP DNA from 19-day-old WT inflorescences using LFY antibody WT Input DNA from 19-day-old inflorescences
19	GSM694046	lfy6_IPvsInput (negative control)	0	University of Pennsylvania	2011-03-21	[Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977)	genomic	Arabidopsis thaliana	other flower/sexual organ	ChIP DNA from 19-day-old lfy6 inflorescences using LFY antibody lfy6 Input DNA from 19-day-old inflorescences
20	GSM665151	organism part name: 24H_Germinating Seed - rep1	92,439	Iowa State University	2011-02-01	[Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620)	RNA	Zea mays	other seed/fruit/grain	fruit (organism part name: 24H_Germinating Seed)

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