Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(365)
  Primates
(4)
  Rodents
(306)
  Mammals
(20)
  Vertebrates
(21)
  Invertebrates
(59)
  Plants
(125)
  Bacteria
(66)
  Viruses
(3)
  Phages
(0)
  Unclassified
(11)
  All
(981)
 
  SAGE NlaIII
(3)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(39)
  Tiling Array
(13)
  cDNA Array
(26)
  Oligo Array
(32)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(9)
  Other
(1)
  All
(125)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing (GSE11209) [HT Sequencing] Yale-Illumina-Yeast-RNA-Seq (GPL6750) Yale University 2008-04-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae
1
(0 x 1)
1 by_platform
by_series
2 A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains (GSE11014) [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) CSIRO Plant Industry 2008-04-01 Oryza sativa
Oryza sativa
2
(0 x 2)
2 by_platform
by_series
3 DNA interactions with the ribosomal enhancer (GSE11340) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) University of Auckland 2008-05-05 Saccharomyces cerevisiae
Saccharomyces cerevisiae
2
(0 x 2)
2 by_platform
by_series
4 A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains (GSE11014) [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) CSIRO Plant Industry 2008-04-01 Oryza sativa
Oryza sativa
4
(0 x 4)
1 1 2 by_platform
by_series
5 Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays (GSE11800) [Tiling Array] [Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array (GPL7249) Stanford University 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
4
(0 x 4)
4 by_platform
by_series
6 Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays (GSE11800) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Stanford University 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
4
(0 x 4)
4 by_platform
by_series
7 Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing (GSE11802) [Tiling Array] [Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array (GPL7249) Stanford University 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
4
(0 x 4)
4 by_platform
by_series
8 Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing (GSE11802) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Stanford University 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
4
(0 x 4)
4 by_platform
by_series
9 A link between RNA metabolism and silencing affecting Arabidopsis development (GSE11070) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Salk-Institute 2008-04-04 Arabidopsis thaliana
Arabidopsis thaliana
6
(0 x 6)
6 by_platform
by_series
10 The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation: ChIP-seq data (GSE11657) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) University of Nebraska-Lincoln 2008-06-03 Arabidopsis thaliana
Arabidopsis thaliana
6
(0 x 6)
6 by_platform
by_series
11 The association between gene expression and whole genome histone H3K4 mono-, di, and trimethylation (GSE11658) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) University of Nebraska-Lincoln 2008-06-03 Arabidopsis thaliana
Arabidopsis thaliana
6
(0 x 6)
6 by_platform
by_series
12 Novel microRNA-target RNA pairs revealed by Parallel analysis of RNA ends (GSE11094) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) Delaware Biotechnology Institute 2008-04-08 Arabidopsis thaliana
Arabidopsis thaliana
7
(0 x 7)
7 by_platform
by_series
13 A link between RNA metabolism and silencing affecting Arabidopsis development (GSE11070) [Tiling Array] [At35b_MR] Affymetrix Arabidopsis Tiling 1.0R Array (GPL10977) Salk-Institute 2008-04-04 Arabidopsis thaliana
Arabidopsis thaliana
8
(0 x 8)
8 by_platform
by_series
14 Identification of genomic regions regulated by the Xrn1 and Upf1 proteins (GSE11621) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) UCLA 2008-05-30 Saccharomyces cerevisiae
Saccharomyces cerevisiae
12
(0 x 12)
12 by_platform
by_series
15 Annotating Low Abundance and Transient RNAs in Yeast using Ultra High-throughput Sequencing (GSE11801) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) Stanford University 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
16
(0 x 16)
16 by_platform
by_series
16 Annotating Low Abundance and Transient RNAs in Yeast using Tiling Microarrays and Ultra High-throughput Sequencing (GSE11802) [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) Stanford University 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
16
(0 x 16)
16 by_platform
by_series
17 Identification of targets of the protein disulfide reductase thioredoxin (GSE11650) [Other] Identification of targets of the protein disulfide reductase thioredoxin (GPL6919) Technical University of Denmark 2008-06-03 Hordeum vulgare
Hordeum vulgare
420
(210 x 2)
2 by_platform
by_series
18 Transcriptional profiling of Ascochyta blight resistance in Lentil (GSE11374) [cDNA Array] PulseChip 1 (GPL3649) University of melbourne 2008-05-07 Lens culinaris subsp. culinaris
Lens culinaris subsp. culinaris
7,680
(768 x 10)
10 by_platform
by_series
19 Evaluation of genes involved in watermelon fruit ripening and development (GSE11246) [Oligo Array] NimbleGen Watermelon 12-plex NimbleScreen array (GPL6772) USDA-ARS 2008-04-23 Citrullus lanatus
Citrullus lanatus
9,996
(833 x 12)
3 9 by_platform
by_series
20 MPA and NQO studies (Sevilla) (GSE11561) [cDNA Array] Yeast_ALL DNA chip (GPL4069) Universitat Autonoma de Barcelona 2008-05-27 Saccharomyces cerevisiae
Saccharomyces cerevisiae
12,446
(6,223 x 2)
2 by_platform
by_series
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