Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(73)		   Primates
(0)		   Rodents
(51)		   Mammals
(0)		   Vertebrates
(0)		   Invertebrates
(0)		   Plants
(47)		   Bacteria
(42)		   Viruses
(0)		   Phages
(0)		   Unclassified
(0)		   All
(304)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(2)		   cDNA Array
(5)		   Oligo Array
(28)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(10)		   Other
(0)		   All
(47)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11022 Illumina Genome Analyzer II (Arabidopsis lyrata) 0 2010-10-07 Arabidopsis lyrata
Arabidopsis lyrata		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Arabidopsis lyrata),
2 GPL11115 Illumina Genome Analyzer (Metarhizium anisopliae) 0 2010-10-26 Metarhizium anisopliae
Metarhizium anisopliae		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Metarhizium anisopliae),
3 GPL11116 Illumina Genome Analyzer (Metarhizium acridum) 0 2010-10-26 Metarhizium acridum
Metarhizium acridum		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Metarhizium acridum),
4 GPL11160 454 GS (Saccharomyces cerevisiae) 0 2010-11-03 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 HT Sequencing high-throughput sequencing, 454 GS (Saccharomyces cerevisiae),
5 GPL11168 Illumina Genome Analyzer (Carthamus tinctorius) 0 2010-11-05 Carthamus tinctorius
Carthamus tinctorius		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Carthamus tinctorius),
6 GPL11192 Illumina Genome Analyzer II (Glycine max) 0 2010-11-10 Glycine max
Glycine max		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Glycine max),
7 GPL11221 Illumina Genome Analyzer IIx (Arabidopsis thaliana) 0 2010-11-17 Arabidopsis thaliana
Arabidopsis thaliana		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer IIx (Arabidopsis thaliana),
8 GPL11262 Illumina Genome Analyzer (Populus euphratica) 0 2010-12-01 Populus euphratica
Populus euphratica		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Populus euphratica),
9 GPL11270 Illumina Genome Analyzer (Gossypium barbadense) 0 2010-12-02 Gossypium barbadense
Gossypium barbadense		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Gossypium barbadense),
10 GPL11345 Illumina Genome Analyzer II (Medicago truncatula) 0 2010-12-21 Medicago truncatula
Medicago truncatula		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Medicago truncatula),
11 GPL11229 SAGE:15:NlaIII:Lentinula edodes 526 2010-11-18 Lentinula edodes
Lentinula edodes		 SAGE NlaIII SAGE NlaIII, SAGE:15:NlaIII:Lentinula edodes, This is a virtual platform for SAGE libraries generated for Lentinula edodes using NlaIII as an anchor enzyme.
12 GPL11213 Candida albicans ENS oligo array version 1.0 948 Jawaharlal Nehru University 2010-11-15 Ecole Normale Superieure, Paris Candida albicans
Candida albicans		 Oligo Array spotted oligonucleotide, Candida albicans ENS oligo array version 1.0,
13 GPL11055 Laval University-Arborea project 3.4K Populus trichocarpa x P. deltoides hybrid (clone H11-11) 3,298 Laval University - ARBOREA 2010-10-14 Laval University (Arborea Project) Populus trichocarpa x Populus deltoides
Populus trichocarpa x Populus deltoides		 cDNA Array spotted DNA/cDNA, Laval University-Arborea project 3.4K Populus trichocarpa x P. deltoides hybrid (clone H11-11), The cDNAs were printed on Corning UltraGaps slides with the Chipwriter Pro microarray printer (Bio-Rad Laboratories, Hercules, CA, USA). SMP3 Microspot quill pins (TeleChem International, Sunnyvale, CA, USA) in a 48-pin tool were used to deposit ~7 nL (~0.2 ng cDNA) per spot onto the slide. Populus trichocarpa x Populus deltoides hybrid (clone H11-11)
14 GPL11082 Candida tenuis 385K tiled array 5,452 University of Wisconsin-Madison 2010-10-21 NimbleGen Candida tenuis ATCC 10573
Candida tenuis ATCC 10573		 Oligo Array in situ oligonucleotide, Candida tenuis 385K tiled array, NimbleGen design name: 090803_CT_DW_EXP; NimbleGen design ID: 23870 A tiled genome array from Candida tenuis NRRL Y-1498 with 363,196 probes (average probe length 53.1 +/- 3.8 nt, median spacing distance 24 nt). The design includes random GC and other control probes.
15 GPL11079 Spathaspora passalidarum 385K tiled array 5,726 University of Wisconsin-Madison 2010-10-21 NimbleGen Spathaspora passalidarum NRRL Y-27907
Spathaspora passalidarum NRRL Y-27907		 Oligo Array in situ oligonucleotide, Spathaspora passalidarum 385K tiled array, NimbleGen design name: 090803_SP_DW_EXP; NimbleGen design ID: 23872. A tiled genome array from Spathaspora passalidarum NRRL Y-27907 with 362,487 probes (average probe length 54.5 +/- 4.0 nt, median spacing distance 29 nt). The design includes random GC and other control probes.
16 GPL11081 Lodderomyces elongisporus 385K tiled array 5,802 University of Wisconsin-Madison 2010-10-21 NimbleGen Lodderomyces elongisporus NRRL YB-4239
Lodderomyces elongisporus NRRL YB-4239		 Oligo Array in situ oligonucleotide, Lodderomyces elongisporus 385K tiled array, NimbleGen design name: 091217_Lelo_KR_EXP; NimbleGen design ID: 26564. A tiled genome array from Lodderomyces elongisporus NRRL YB-4239 with 371,451 probes (average probe length 54.1 +/- 4.1 nt, median spacing distance 33 nt). The design includes random GC and other control probes.
17 GPL11080 Picha stipitis 385K tiled array 5,807 University of Wisconsin-Madison 2010-10-21 NimbleGen Scheffersomyces stipitis CBS 6054
Scheffersomyces stipitis CBS 6054		 Oligo Array in situ oligonucleotide, Picha stipitis 385K tiled array, NimbleGen design name: 090803 PS DW EXP; NimbleGen design ID: 23871. A tiled genome array from Pichia stipitis CBS 6054 with 374,100 probes (average probe length 53.6 +/- 4.1 nt, median spacing distance 33 nt). The design includes random GC and other control probes.
18 GPL11083 Candida albicans 385K tiled array 6,182 University of Wisconsin-Madison 2010-10-21 NimbleGen Candida albicans WO-1
Candida albicans WO-1		 Oligo Array in situ oligonucleotide, Candida albicans 385K tiled array, NimbleGen design name: 091217_Calb_KR_EXP; NimbleGen design ID: 26563. A tiled genome array from Candida albicans WO-1 with 373,067 probes (average probe length 55.2 +/- 4.0 nt, median spacing distance 31 nt). The design includes random GC and other control probes.
19 GPL11064 J.Kim Yeast Operon (2005,2006,2007) 6,347 University of Pennsylvania 2010-10-15 Operon Biotechnologies merged with Eurofins MWG Operon Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Oligo Array spotted oligonucleotide, J.Kim Yeast Operon (2005,2006,2007), This 'platform' represents the following three prints of the Operon Saccharomyces cerevisiae (yeast) AROS V1.1. All three gal files and additional annotations are present in the supplementary files (links below). 30 August 2005: 15538 spots 11 July 2006: 15552 spots 26 March 2007: 15552 spots
20 GPL11043 Yeast Splicing/Expression Chip v6.2-6.3 7,625 UCSC 2010-10-12 UCSC Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Oligo Array spotted oligonucleotide, Yeast Splicing/Expression Chip v6.2-6.3, This is an oligonucleotide microarray designed to measure splicing and expression in yeast. Each intron containing gene has 3 features (Splice Junction, Intron, Exon2). The SJ oligo symmetrically spans the splice junction with 20nt on each side. The SJ, Int, and Ex2 oligos are custom designed 40-mers. The array also contains the Operon Yeast Genome 70-mer Set. All of the SJ, Int, and Ex2 oligos are printed 4 times, the Operon 70-mers are printed twice each. Keywords = Splicing and Expression Supplementary files: GAL files representing 2 different print layouts.
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