Gene Expression Omnibus (GEO) Overview

RSS

[ Top ] > [ 2003-07 ]

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(17)

Primates
(0)

Vertebrates
(0)

Plants
(28)

Phages
(0)

Unclassified
(0)

All
(64)

SAGE NlaIII
(1)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(0)

Tiling Array
(16)

cDNA Array
(8)

Oligo Array
(3)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(28)

1 | 2 »

	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL432	Arabidopsis Whole Genome Tiling Array 1-1	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-1, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the forward strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2 GI:18426880) from base 1 to base 19,658,475. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
2	GPL433	Arabidopsis Whole Genome Tiling Array 1-2	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-2, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the forward strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2 GI:18426880) from base 19,658,476 to base 30,080,809 (end) and Chromosome 2 (GenBank accession # NC_003071.1 GI:15224037) from base 1 to base 9,108,425. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (this chip, WGA 1-2) and opposite strand oligos ( chip WGA 1-rc-2), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
3	GPL434	Arabidopsis Whole Genome Tiling Array 1-3	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-3, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the forward strand of the sequence of Chromosome 2 (GenBank accession # NC_003071.1 GI:15224037) from base 9,108,426 to base 19,643,621 (end) and Chromosome 3 (GenBank accession # NC_003074.2 GI:18426881) from base 1 to base 8,826,800. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward(this chip, WGA 1-3) and opposite strand oligos ( chip WGA 1-rc-3), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
4	GPL435	Arabidopsis Whole Genome Tiling Array 1-4	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-4, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the forward strand of the sequence of Chromosome 3 (GenBank accession # NC_003074.2 GI:18426881) from base 8,826,801 to base 23,465,812 (end) and Chromosome 4 (GenBank accession # NC_003075.1 GI:15233324) from base 1 to base 5,087,400. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (this chip, WGA 1-4) and opposite strand oligos (chip WGA 1-rc-4), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
5	GPL436	Arabidopsis Whole Genome Tiling Array 1-5	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-5, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the forward strand of the sequence of Chromosome 4 (GenBank accession # NC_003075.1 GI:15233324) from base 5,087,401 to base 17,549,528 (end) and Chromosome 5 (GenBank accession # NC_003076.2 GI:18426882) from base 1 to base 6,932,925. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (this chip, WGA 1-5) and opposite strand oligos (chip WGA 1-rc-5), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
6	GPL437	Arabidopsis Whole Genome Tiling Array 1-6	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-6, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the forward strand of the sequence of Chromosome 5 (GenBank accession # NC_003076.2 GI:18426882) from base 6,932,926 to base 26,689,408 (end). Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (this chip, WGA 1-6) and opposite strand oligos (chip WGA 1-rc-6), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
7	GPL438	Arabidopsis Whole Genome Tiling Array 1-rc-1	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-rc-1, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2 GI:18426880) from base 1 to base 19,658,475. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip WGA 1-1) and opposite strand oligos (this chip WGA 1-rc-1), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
8	GPL439	Arabidopsis Whole Genome Tiling Array 1-rc-2	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-rc-2, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 1 (GenBank accession # NC_003070.2 GI:18426880) from base 19,658,476 to base 30,080,809 (end) and Chromosome 2 (GenBank accession # NC_003071.1 GI:15224037) from base 1 to base 9,108,425. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip WGA 1-2) and opposite strand oligos (this chip WGA 1-rc-2), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
9	GPL440	Arabidopsis Whole Genome Tiling Array 1-rc-3	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-rc-3, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 2 (GenBank accession # NC_003071.1 GI:15224037) from base 9,108,426 to base 19,643,621 (end) and Chromosome 3 (GenBank accession # NC_003074.2 GI:18426881) from base 1 to base 8,826,800. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip, WGA 1-3) and opposite strand oligos (this chip WGA 1-rc-3), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
10	GPL441	Arabidopsis Whole Genome Tiling Array 1-rc-4	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-rc-4, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 3 (GenBank accession # NC_003074.2 GI:18426881) from base 8,826,801 to base 23,465,812 (end) and Chromosome 4 (GenBank accession # NC_003075.1 GI:15233324) from base 1 to base 5,087,400. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward( chip WGA 1-4) and opposite strand oligos ( this chip WGA 1-rc-4), so the position listed in the table is the position of base 25(5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
11	GPL442	Arabidopsis Whole Genome Tiling Array 1-rc-5	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-rc-5, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 4 (GenBank accession # NC_003075.1 GI:15233324) from base 5,087,401 to base 17,549,528 (end) and Chromosome 5 (GenBank accession # NC_003076.2 GI:18426882) from base 1 to base 6,932,925. Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip WGA 1-5) and opposite strand oligos (this chip, WGA 1-rc-5), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
12	GPL443	Arabidopsis Whole Genome Tiling Array 1-rc-6	835,396	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Whole Genome Tiling Array 1-rc-6, This Affymetrix array tiles the Arabidopsis genome end to end using in situ synthesized 25 bp oligonucleotides. The January 2002 version of the Arabidopsis genome sequence was used to make these chips and the position coordinates in the table refer to this version of the sequence. Six chips were required to tile one strand of the genome. This chip tiles the opposite strand of the sequence of Chromosome 5 (GenBank accession # NC_003076.2 GI:18426882) from base 6,932,926 to base 26,689,408 (end). Position coordinates in table refer to the accession(s) listed above and are the same for each pair of forward (chip WGA 1-6) and opposite strand oligos (this chip, WGA 1-rc-6), so the position listed in the table is the position of base 25 (5-prime to three-prime) of the opposite strand oligo. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
13	GPL428	Arabidopsis Pilot Genome Tiling Array 1A	409,600	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Pilot Genome Tiling Array 1A, This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap using in situ synthesized 25 bp oligonucleotides. Perfect match and central position mismatch probes were made for these arrays. The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array. This chip tiles the first half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 1 that was chosen for these pilot arrays. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
14	GPL429	Arabidopsis Pilot Genome Tiling Array 1B	409,600	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Pilot Genome Tiling Array 1B, This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap using in situ synthesized 25 bp oligonucleotides. Perfect match and central position mismatch probes were made for these arrays. The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array. This chip tiles the second half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 1 that was chosen for these pilot arrays. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
15	GPL430	Arabidopsis Pilot Genome Tiling Array 1C	409,600	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Pilot Genome Tiling Array 1C, This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap using in situ synthesized 25 bp oligonucleotides. Perfect match and central position mismatch probes were made for these arrays. The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array. This chip tiles the first half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 2 that was chosen for these pilot arrays. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
16	GPL431	Arabidopsis Pilot Genome Tiling Array 1D	409,600	Stanford Genome Technology Center	2003-08-20		Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis Pilot Genome Tiling Array 1D, This set of Affymetrix array tiles 5 Mb the Arabidopsis genome with a 12 bp overlap using in situ synthesized 25 bp oligonucleotides. Perfect match and central position mismatch probes were made for these arrays. The position coordinates in the table refer to the begining of the 2.5 Mb chromosomal fragment that was tiled on the array. This chip tiles the second half (1.25 MB) of both strands of the 2.5 Mb sequence of Chromosome 2 that was chosen for these pilot arrays. Features that have no sequence information represent positioning grids/checkerboards or random sequence controls.
17	GPL385	SAGE:10:NlaIII:Pinus taeda	42,641		2003-08-08		Pinus taeda	SAGE NlaIII	SAGE NlaIII, SAGE:10:NlaIII:Pinus taeda,
18	GPL477	RICE oligo microarray ver1	22,575	National Institute of Agrobiological Sciences	2003-09-03		Oryza sativa	Oligo Array	spotted oligonucleotide, RICE oligo microarray ver1, On the basis of the collection, mapping and annotation of over 28,000 full-length cDNA clones from japonica rice(Science Jul 18 2003: 376-379), we have constructed a monitoring system that uses the sequence information of the full-length cDNA clones as a 60mer-single stranded oligonucleotide format. Probes on the array (ca 22,000) cover the whole transcription units corresponding to 28K full-length cDNA clones Keywords = Rice Keywords = Plant Keywords = monocotyledons Keywords = full-length cDNA Keywords = 60mer oligonucleotide Keywords = NIAS
19	GPL483	Agilent/Paradigm Arabidopsis 60mer in situ Genome Array	21,939	Paradigm Genetics, Inc	2003-09-09		Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Agilent/Paradigm Arabidopsis 60mer in situ Genome Array, This array contains 20,426 Arabidopsis thaliana gene probes as specified by Paradigm Genetics. It is manufactured by Agilent Technologies by in situ synthesis of 60mer oligonucleotides using an ink-jet printing method.
20	GPL499	ZmDB Array Unigene-1-01-07	17,296	Universidad Nacional de Rosario	2003-09-18		Zea mays	cDNA Array	spotted DNA/cDNA, ZmDB Array Unigene-1-01-07, Maize Unigene I arrays fabricated by the Maize Gene Discovery Project contain 5664 ESTs (for more information, see http://gremlin3.zool.iastate.edu/zmdb/microarray/). Within these arrays, the cDNA samples are printed three times next to each other; consequently, average signal intensities and the ratio between co-hybridized samples could be assessed multiple times within each microarray and within experiments. These arrays contain cDNAs recovered from libraries of mixed adult tissues (707 and 945), mixed stages of embryo development (687), and salt-stressed roots (603).

1 | 2 »