Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17)		   Primates
(0)		   Rodents
(1)		   Mammals
(0)		   Vertebrates
(0)		   Invertebrates
(11)		   Plants
(20)		   Bacteria
(6)		   Viruses
(0)		   Phages
(0)		   Unclassified
(1)		   All
(56)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(0)		   cDNA Array
(11)		   Oligo Array
(9)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(20)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16117 NimbleGen Citrus sinensis custom array [090831_FAPESP_Citrus_sinensis_expr] 126,140 Centro de Citricultura Sylvio Moreira 2012-09-28 NimbleGen Citrus sinensis
Citrus sinensis		 Oligo Array in situ oligonucleotide, NimbleGen Citrus sinensis custom array [090831_FAPESP_Citrus_sinensis_expr], NimbleGen design ID 10554, for OID24250 for Citrus sinensis, based on 31,535 sequences plus probes for six additional citrus sequences. Array density of 385K, probes with 60mer. 3 probes per target, 4 copies on array. The design includes random GC and other control probes. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
2 GPL10066 090122_Orange_MY_exp 62,797 Centro de citricultura 'Sylvio Moreira' /IAC 2010-02-18 NimbleGen Citrus sinensis,Citrus trifoliata,Citrus reticulata
Citrus sinensis,Citrus trifoliata,Citrus reticulata		 Oligo Array in situ oligonucleotide, 090122_Orange_MY_exp, NimbleGen design name 2005-08-12_B_fragilis_24mer, NimbleGen design ID 2451. A expression design for 62,876 unigenes (18,712 unigenes of C. sinensis; 31,583 unigenes of C. reticulata and 12,581 unigenes of P. trifoliate) selected from CitEST database assembled from the EST submitted to NCBI (Genebank accession number EY649559 to EY842485). Each probe is replicated 2 times. The design includes random GC and other control probes. The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
3 GPL14862 SUCEST-FUN Sugarcane 44k v1.0 45,220 Universidade de São Paulo - USP 2011-11-09 Agilent Technologies Saccharum officinarum
Saccharum officinarum		 Oligo Array spotted oligonucleotide, SUCEST-FUN Sugarcane 44k v1.0, CaneRegNet microarray (44k multiplex chip, agilent) was designed using an in-house developed method for empirical selection of best performing probes (60bp long oligomers) for each SAS (Sugarcane Assembled Sequence - Pre Selection Strategy based on gene function and categorization). Were designed two probes for each cluster SAS from SUCEST Project, one in the sense orientation and another one in the antisense orientation if available or one sense probe. The microarray contain 21902 oligo probes in sense and antisense orientation corresponding of a total of 14522 SAS.
4 GPL15870 Agilent-029535 Aspergillus nidulans FGSC A4 array [Feature Number version] 45,220 FCFRP-USP 2012-07-30 Agilent Technologies Aspergillus nidulans FGSC A4
Aspergillus nidulans FGSC A4		 Oligo Array in situ oligonucleotide, Agilent-029535 Aspergillus nidulans FGSC A4 array [Feature Number version],
5 GPL5397 TIGR PFGRC Aspergillus nidulans version 1 array designed primarily based on strain FGSC A4 25,392 Faculty of Pharmaceutical Sciences of Ribeirão Preto 2007-06-18 TIGR PFGRC (The Pathogen Functional Genomics Resource Center) Emericella nidulans
Emericella nidulans		 Oligo Array spotted oligonucleotide, TIGR PFGRC Aspergillus nidulans version 1 array designed primarily based on strain FGSC A4, This set includes 11481 oligonucleotides (ss oligo 70 mer), has 23962 spots (2x oligo replicates) distributed in 48 blocks. The condensed array layout file (ie, 1x representation of oligos) is linked below as a supplementary file.
6 GPL6085 TIGR PFGRC Aspergillus fumigatus v2 array designed primarily based on strain Af293 22,176 Faculty of Pharmaceutical Sciences of Ribeirao Preto 2007-11-05 TIGR PFGRC (The Pathogen Functional Genomics Resource Center) Aspergillus fumigatus
Aspergillus fumigatus		 Oligo Array spotted oligonucleotide, TIGR PFGRC Aspergillus fumigatus v2 array designed primarily based on strain Af293, This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks. The condensed array layout file (ie, 1x representation of oligos) is linked below as a supplementary file.
7 GPL8346 TIGR PFGRC Aspergillus fumigatus 22K v3 array (designed primarily based on strain Af293) 22,176 Faculty of Pharmaceutical Sciences of Ribeirao Preto 2009-03-26 TIGR PFGRC (The Pathogen Functional Genomics Resource Center) Aspergillus fumigatus
Aspergillus fumigatus		 Oligo Array spotted oligonucleotide, TIGR PFGRC Aspergillus fumigatus 22K v3 array (designed primarily based on strain Af293), This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks. The condensed array layout file (ie, 1x representation of oligos) is linked below as a supplementary file.
8 GPL11072 University of Sao Paulo-FCFRP/Molecular Biology Lab Aspergillus niger 4 X 44K v. 1.0 14,110 University of Sao Paulo 2010-10-19 Agilent Technologies Aspergillus niger
Aspergillus niger		 Oligo Array in situ oligonucleotide, University of Sao Paulo-FCFRP/Molecular Biology Lab Aspergillus niger 4 X 44K v. 1.0,
9 GPL15593 Agilent_029535 Univ. of Sao Paulo-FCFRP/Mol Biol Lab Aspergillus nidulans 4X44K v.1.0 11,201 University of Sao Paulo 2012-05-22 Agilent Technologies Emericella nidulans
Emericella nidulans		 Oligo Array in situ oligonucleotide, Agilent_029535 Univ. of Sao Paulo-FCFRP/Mol Biol Lab Aspergillus nidulans 4X44K v.1.0,
10 GPL2780 Paracoccidioides brasiliensis microarray v1 4,800 UFABC - Universidade Federal do ABC 2005-08-25 Laboratório de Genômica Estrutural e Funcional - Núcleo Integrado de Biotecnologia - Universidade de Mogi das Cruzes Paracoccidioides brasiliensis
Paracoccidioides brasiliensis		 cDNA Array spotted DNA/cDNA, Paracoccidioides brasiliensis microarray v1, Paracoccidioides brasiliensis isolate 18
11 GPL1375 SUCAST1920v2 4,608 Universidade Estadual de Campinas - UNICAMP 2004-07-23 Saccharum officinarum
Saccharum officinarum		 cDNA Array spotted DNA/cDNA, SUCAST1920v2, Five 384-well plates with 1920 SUCAST clones rearrayed for spotting
12 GPL1376 SUCAST1920v3 4,608 Universidade Estadual de Campinas - UNICAMP 2004-07-23 Saccharum officinarum
Saccharum officinarum		 cDNA Array spotted DNA/cDNA, SUCAST1920v3, Five 384-well plates with 1920 SUCAST clones rearrayed for spotting
13 GPL3799 SUCAST Sugarcane 2208 v1.0 4,608 Universidade de São Paulo - USP 2006-05-24 CAGE - USP Saccharum officinarum
Saccharum officinarum		 cDNA Array spotted DNA/cDNA, SUCAST Sugarcane 2208 v1.0, Six 384-well plates representing 1830 unique SUCAST SAS were rearrayed for spotting
14 GPL4516 USP Blastocladiella emersonii 4.6 K Blasto3773 v2 4,608 Universidade de São Paulo 2006-11-01 Universidade de Sao Paulo-Instituto de Quimica Blastocladiella emersonii
Blastocladiella emersonii		 cDNA Array spotted DNA/cDNA, USP Blastocladiella emersonii 4.6 K Blasto3773 v2,
15 GPL7334 USP Blastocladiella emersonii 4.6 K Blasto3773 v3 4,608 Universidade Federal de Goiás 2008-09-18 Universidade de São Paulo-Instituto de Química Blastocladiella emersonii
Blastocladiella emersonii		 cDNA Array spotted DNA/cDNA, USP Blastocladiella emersonii 4.6 K Blasto3773 v3,
16 GPL6148 Moniliophthora perniciosa 3.9K glass slides 2 3,872 UNICAMP 2007-11-16 Laboratorio de Genomica e Expressao Moniliophthora perniciosa
Moniliophthora perniciosa		 cDNA Array spotted DNA/cDNA, Moniliophthora perniciosa 3.9K glass slides 2, Glass slides containing whole genome shotgun reads from M. perniciosa. The array has 32 subarrays (8 rows by 4 columns), each subarray consisting of 11 rows by 11 columns.
17 GPL6149 Moniliophthora perniciosa 3.9K glass slides 1 3,872 UNICAMP 2007-11-16 Laboratorio de Genomica e Expressao Moniliophthora perniciosa
Moniliophthora perniciosa		 cDNA Array spotted DNA/cDNA, Moniliophthora perniciosa 3.9K glass slides 1, Glass slides containing whole genome shotgun reads from M. perniciosa. The array has 32 subarrays (8 rows by 4 columns), each subarray consisting of 11 rows by 11 columns.
18 GPL1329 Sugarcane ESTs nylon arrays I 3,072 Unicamp 2004-07-06 Saccharum officinarum complex
Saccharum officinarum complex		 cDNA Array spotted DNA/cDNA, Sugarcane ESTs nylon arrays I, Nylon membranes containing sugarcane ESTs. Plasmid clones were used. A set of sixteen 96-well plates was spotted on two nylon filters (85 mm x 125 mm) in a 4 x 4 array configuration, with a 96 pins hand-held array pin tool.
19 GPL1730 coffee nylon arrays 3,072 UNICAMP 2004-12-06 Coffea hybrid cultivar
Coffea hybrid cultivar		 cDNA Array spotted DNA/cDNA, coffee nylon arrays, Nylon membranes containing coffee ESTs from subtracted cDNA librares. Plasmid clones were used. A set of sixteen 96-well plates was spotted on two nylon filters (85 mm x 125 mm) in a 4 x 4 array configuration, with a 96 pins hand-held array tool
20 GPL210 Sugarcane nylon arrays I 3,072 Institute of Biology 2002-09-04 Saccharum sp.
Saccharum sp.		 cDNA Array spotted DNA/cDNA, Sugarcane nylon arrays I, Nylon membranes containing sugarcane ESTs. Plasmid clones were used. A set of sixteen 96-well plates was spotted on two nylon filters (85 mm x 125 mm) in a 4 x 4 array configuration, with a 96 pins hand-held array tool. Keywords = nylon array, saccharum, cold
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