Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(220)		   Primates
(8)		   Rodents
(273)		   Mammals
(11)		   Vertebrates
(10)		   Invertebrates
(64)		   Plants
(106)		   Bacteria
(52)		   Viruses
(0)		   Phages
(0)		   Unclassified
(6)		   All
(750)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(29)		   Tiling Array
(16)		   cDNA Array
(29)		   Oligo Array
(15)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(17)		   Other
(0)		   All
(106)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Design of a Tobacco Exon Array with application to investigate the differential cadmium accumulation property in two tobacco varieties (GSE42319) [GeneChip] [TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F (GPL16290) Philip Morris Products SA 2012-11-15 Nicotiana tabacum
Nicotiana tabacum		 5,719,182
(272,342 x 21) 		11 10 by_platform
by_series
2 Cold-induced silencing mediated by long antisense FLC transcripts (GSE16977) [Tiling Array] JIC Arabidopsis thaliana 130K FCA FPA tiling (GPL8812) EPFL 2009-07-07 Arabidopsis thaliana
Arabidopsis thaliana		 2,475,738
(130,302 x 19) 		19 by_platform
by_series
3 Comprehensive assessment of the regulons controlled by the FixLJ-FixK2-FixK1 cascade in Bradyrhizobium japonicum (GSE12491) [GeneChip] Affymetrix custom Bradyrhizobium japonicum strain USDA 110 19K array (GPL3401) ETH Zurich 2008-08-19 Glycine max
Glycine max		 1,839,896
(18,968 x 97) 		3 94 by_platform
by_series
4 Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA (mRNA) (GSE38362) [Oligo Array] Agilent custom Arabidopsis thaliana 45K (GPL15635) University of Zurich 2012-05-31 Arabidopsis thaliana
Arabidopsis thaliana		 1,627,560
(45,210 x 36) 		36 by_platform
by_series
5 Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA (GSE38363) [Oligo Array] Agilent custom Arabidopsis thaliana 45K (GPL15635) University of Zurich 2012-05-31 Arabidopsis thaliana
Arabidopsis thaliana		 1,627,560
(45,210 x 36) 		36 by_platform
by_series
6 Comparison analysis of B. japonicum mutant and wild type grown under different conditions (GSE9100) [GeneChip] Affymetrix custom Bradyrhizobium japonicum strain USDA 110 19K array (GPL3401) ETH Zurich 2007-09-19 Glycine max
Glycine max		 1,365,696
(18,968 x 72) 		3 69 by_platform
by_series
7 Genome-wide transcript analysis of Bradyrhizobium japonicum bacteroids in soybean root nodules (GSE8478) [GeneChip] Affymetrix custom Bradyrhizobium japonicum strain USDA 110 19K array (GPL3401) FGCZ 2007-07-13 Glycine max
Glycine max		 1,346,728
(18,968 x 71) 		3 68 by_platform
by_series
8 Transcriptomic response to aluminum stress in roots of aspen (Populus tremula L.) (GSE19297) [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) ETH Zurich 2009-12-03 Populus tremula
Populus tremula		 1,105,434
(61,413 x 18) 		18 by_platform
by_series
9 Pleiotropic expression of endogenous genes upon fungus infection of wheat plants containing anti-fungal transgenes (GSE22080) [GeneChip] [wheat] Affymetrix Wheat Genome Array (GPL3802) ETHZ 2010-06-01 Triticum aestivum
Triticum aestivum		 1,103,220
(61,290 x 18) 		18 by_platform
by_series
10 Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance (GSE13628) [Oligo Array] CATMA_CIG_Arabidopsis_25K_V1 (GPL6147) University of Lausanne 2008-11-17 Arabidopsis thaliana
Arabidopsis thaliana		 848,844
(24,966 x 34) 		34 by_platform
by_series
11 Temporal gene expression analyisis from rice root (cv. Nipponbare) infected with Magnaporthe oryzae strain Guy11 (GSE18361) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) University of Lausanne 2009-10-01 Oryza sativa
Oryza sativa		 688,572
(57,381 x 12) 		12 by_platform
by_series
12 Phytochrome Interacting Factor 4 and 5 regulate different set of genes in high and low red/far-red light (GSE35057) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Université de Lausanne 2012-01-12 Arabidopsis thaliana
Arabidopsis thaliana		 547,440
(22,810 x 24) 		24 by_platform
by_series
13 Phytochrome Interacting Factors 4 and 5 (GSE35062) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Université de Lausanne 2012-01-12 Arabidopsis thaliana
Arabidopsis thaliana		 547,440
(22,810 x 24) 		24 by_platform
by_series
14 Plant response to misfolded protein in the cytosol (GSE11758) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) EPFL 2008-06-11 Arabidopsis thaliana
Arabidopsis thaliana		 501,820
(22,810 x 22) 		22 by_platform
by_series
15 Affinity purification of ribosomes and associated RNAs from stress-treated cells (GSE13653) [cDNA Array] Saccharomyces cerevisiae 9.2K Print_1137 (GPL7662) Swiss Federal Institute of Technology 2008-11-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 479,232
(9,216 x 52) 		52 by_platform
by_series
16 Affinity purification of ribosomes and associated RNAs from stress-treated cells using tagged Rpl16a and Rpl16b (GSE13682) [cDNA Array] Saccharomyces cerevisiae 9.2K Print_1137 (GPL7662) Swiss Federal Institute of Technology 2008-11-20 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 479,232
(9,216 x 52) 		52 by_platform
by_series
17 RNA-affinity isolations 13 RBPs (GSE21864) [cDNA Array] SMD Print_1381 Saccharomyces cerevisiae (GPL8306) Swiss Federal Institute of Technology 2010-05-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 437,760
(10,944 x 40) 		40 by_platform
by_series
18 Phytochrome Interacting Factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light. (GSE16333) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) UNI Lausanne 2009-05-28 Arabidopsis thaliana
Arabidopsis thaliana		 410,580
(22,810 x 18) 		18 by_platform
by_series
19 Transcriptional gene silencing mediated by interplay of MOM1 and Pol V (GSE17940) [Tiling Array] Arabidopsis Tiling 1.0R [TAIR7-based custom CDF, ORF version] (GPL9139) University of Geneva 2009-09-02 Arabidopsis thaliana
Arabidopsis thaliana		 356,040
(29,670 x 12) 		12 by_platform
by_series
20 Stress-induced activation of heterochromatic transcription (GSE23243) [Tiling Array] Arabidopsis Tiling 1.0R [TAIR7-based custom CDF, ORF version] (GPL9139) University of Geneva 2010-07-28 Arabidopsis thaliana
Arabidopsis thaliana		 356,040
(29,670 x 12) 		12 by_platform
by_series
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