Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22)
  Primates
(0)
  Rodents
(13)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(12)
  Plants
(24)
  Bacteria
(25)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(106)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(1)
  Tiling Array
(4)
  cDNA Array
(10)
  Oligo Array
(9)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(24)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16290 [TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F 272,342 Philip Morris Products SA 2012-11-15 Affymetrix Nicotiana tabacum
Nicotiana tabacum
GeneChip in situ oligonucleotide, [TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F, Custom single-channel exon array. From the analysis and annotation of the 1,271,256 Nicotiana tabacum fasta and quality files from methyl filtered genomic survey sequences (GSS) obtained from the TGI (http://www.pngg.org/tgi/) and ~56,000 ESTs available in public databases, an exon array with 272,342 probesets was designed (four probes per exon). The array covers ~90% of the tobacco gene space. The supplementary file 'GPL16290_TobArrays520623F.1lq.txt' includes probe sequences.
2 GPL8812 JIC Arabidopsis thaliana 130K FCA FPA tiling 130,302 EPFL 2009-07-07 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana
Tiling Array in situ oligonucleotide, JIC Arabidopsis thaliana 130K FCA FPA tiling,
3 GPL15635 Agilent custom Arabidopsis thaliana 45K 45,210 University of Zurich 2012-05-31 Agilent Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array in situ oligonucleotide, Agilent custom Arabidopsis thaliana 45K,
4 GPL15312 Agilent-017743 Physcomitrella custom 4x44K array 41,444 University of Lausanne 2012-03-06 Agilent Technologies Physcomitrella patens
Physcomitrella patens
Oligo Array in situ oligonucleotide, Agilent-017743 Physcomitrella custom 4x44K array,
5 GPL9139 Arabidopsis Tiling 1.0R [TAIR7-based custom CDF, ORF version] 29,670 University of Basel 2009-09-02 Affymetrix Arabidopsis thaliana
Arabidopsis thaliana
Tiling Array in situ oligonucleotide, Arabidopsis Tiling 1.0R [TAIR7-based custom CDF, ORF version], Affymetrix Whole Genome Tiling Array Chip designed by the Salk Institute and Affymetrix. Chip Definition File based on TAIR7 genome as reported in Naouar et al. Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes. Plant J (2009) vol. 57 (1) pp. 184-94 (PMID: 18764924). The CDF file for use in R is included as a supplementary file.
6 GPL6147 CATMA_CIG_Arabidopsis_25K_V1 24,966 University of Lausanne 2007-11-16 DNA Array Facility, Center for Integrative Genomics, Genopode, University of Lausanne Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array mixed spotted oligonucleotide/cDNA, CATMA_CIG_Arabidopsis_25K_V1,
7 GPL10418 SMD Print_1329 Saccharomyces cerevisiae 19,968 Swiss Federal Institute of Technology 2010-05-17 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, SMD Print_1329 Saccharomyces cerevisiae,
8 GPL13913 Eawag Chlamydomonas reinhardtii 44K v1.0 (16K unique probes) 16,343 Eawag 2011-07-13 Agilent Chlamydomonas reinhardtii
Chlamydomonas reinhardtii
Oligo Array spotted oligonucleotide, Eawag Chlamydomonas reinhardtii 44K v1.0 (16K unique probes),
9 GPL17199 Agilent-024768 TAL_calbicans 15,744 FGCZ Zuerich 2013-05-24 Agilent Technologies Candida albicans
Candida albicans
Oligo Array in situ oligonucleotide, Agilent-024768 TAL_calbicans, C. albicans, Assembly21 Arrays of this design have barcodes that begin with 16024768 or 2524768. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
10 GPL7663 Saccharomyces cerevisiae 10.9K Print_1137 10,944 Swiss Federal Institute of Technology 2008-11-18 Center for Integrative Genomics, University of Lausanne, Switzerland Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Saccharomyces cerevisiae 10.9K Print_1137, Nexterion epoxy slides
11 GPL8125 Saccharomyces cerevisiae 10.9K Print_AG3 10,944 University of Zürich 2009-01-28 Center for Integrative Genomics, University of Lausanne, Switzerland Saccharomyces cerevisiae
Saccharomyces cerevisiae
Oligo Array spotted oligonucleotide, Saccharomyces cerevisiae 10.9K Print_AG3, Identical to platform GPL7663
12 GPL8306 SMD Print_1381 Saccharomyces cerevisiae 10,944 Swiss Federal Institute of Technology 2009-03-16 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, SMD Print_1381 Saccharomyces cerevisiae,
13 GPL8546 SMD Print_1548 Saccharomyces cerevisiae 10,944 Swiss Federal Institute of Technology 2009-05-12 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, SMD Print_1548 Saccharomyces cerevisiae,
14 GPL8555 SMD Print_1380 Saccharomyces cerevisiae 10,944 Swiss Federal Institute of Technology 2009-05-14 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, SMD Print_1380 Saccharomyces cerevisiae,
15 GPL6420 Print_626 10,752 Swiss Federal Institute of Technology 2008-01-25 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Print_626,
16 GPL6419 Print_835 9,984 Swiss Federal Institute of Technology 2008-01-25 Stanford Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Print_835,
17 GPL6421 Print_627 9,600 Swiss Federal Institute of Technology 2008-01-25 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Print_627,
18 GPL7662 Saccharomyces cerevisiae 9.2K Print_1137 9,216 Swiss Federal Institute of Technology 2008-11-18 Stanford Functional Genomics Facility, Stanford School of Medicine Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, Saccharomyces cerevisiae 9.2K Print_1137,
19 GPL1695 yeast intergenic array 6,814 University of Geneva 2004-11-08 Saccharomyces cerevisiae
Saccharomyces cerevisiae
Oligo Array spotted oligonucleotide, yeast intergenic array, -Platform: amino-silane coated glass slides (GAPS II, Corning) -S. cerevisiae intergenic regions amplified from S288C genomic DNA (ResGen) using the intergenic region primer oligonucleotides (ResGen) (Harismendy et al. EMBO J. 22(18): 4738-4747, 2003). The primers allow the amplification of the sequence located on either side of elements such as open reading frames, tRNAs, small nuclear RNAs, Ty elements, solo δ, etc. A complete description of the primers can be obtained on the web site (ftp://ftp.resgen.com/pub/genepairs/yeast_intergenic). -The PCR products were purified and spotted using an automated arrayer (MicroGrid II, BioRobotics)
20 GPL15960 Agilent-037331 Copy_of_C. albicans assembly 21_017942 [ORF name version] 6,101 University of Lausanne and University Hospital Center 2012-08-20 Agilent Technologies Candida albicans
Candida albicans
Oligo Array in situ oligonucleotide, Agilent-037331 Copy_of_C. albicans assembly 21_017942 [ORF name version],
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