Gene Expression Omnibus (GEO) Overview

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Primates
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Vertebrates
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Invertebrates
(1)

Plants
(6)

Viruses
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Phages
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Unclassified
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SAGE NlaIII
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SAGE RsaI
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SAGE Sau3A
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MPSS
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Tiling Array
(1)

Oligo Array
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Bead Array
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Protein Array
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Antibody
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RT-PCR
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HT-Seq
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Other
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All
(6)

	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL289	Segal_3	6,111	Stanford University	2003-04-15		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Segal_3, Used to examine wild type and ypl230w mutant under stationary phase.
2	GPL287	Segal_1	5,993	Stanford University	2003-04-15		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Segal_1, Used to examine wild type and kin82 mutant under heat shock.
3	GPL288	Segal_2	5,832	Stanford University	2003-04-15		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Segal_2, Used to examine wild type and ppt1 mutant under hypo-osmotic shock.
4	GPL348	Eucalyptus xylem microarray (NCSU)	5,216	University of Florida	2003-06-29		Eucalyptus grandis,Eucalyptus tereticornis	GeneChip	spotted DNA/cDNA, Eucalyptus xylem microarray (NCSU), The cDNA microarray comprises 2608 ESTs, printed in duplicate. Each cDNA has been printed by Pin 1 and 4, or by Pin 2 and 3. 555 ESTs represent the UniGene set derived from the sequencing of a cDNA library from Eucalyptus grandis differentiating xylem generated by the Forest Biotechnology Group at NCSU (egx prefix). The remaining 2053 ESTs are from four libraries from Eucalyptus grandis leaf and root tissue and two libraries from Eucalyptus tereticornis flower tissues, kindly made available by DuPont (Scott Tingey, DuPont Crop Genetics, Newark, DE). These ESTs were selected from a collection of approximately 13,000 sequences, based on their putative function in the biogenesis of cell walls, biogenesis of the cytoskeleton, biosynthesis of phenylpropanoids, protein targeting, c-compound and carbohydrate metabolism, cell growth, signal transduction, protein transport, energy metabolism and other functions potentially associated to wood formation. The cDNA clones were amplified by PCR, purified (Millipore 96-well Multiscreen filter plates) and the quality of the amplification evaluated using agarose gels. Preparations with multiple bands and low quality amplified cDNAs were eliminated and repeated. After dilution in 50% DMSO, cDNAs were printed in duplicate on aminosilane-coated glass slides (Corning) using an Affymetrix 417 Spotter. Keywords = Eucalyptus xylem
5	GPL347	rikDacFC6	882	The University of Tokyo	2003-06-24	Affymetrix	Saccharomyces cerevisiae	Tiling Array	in situ oligonucleotide, rikDacFC6, Highdensity Yeast Chromosome VI tiling oligo-nucleotide array which can analyze chromosome VI at 300bp resolution. Produced by Affymetrix. Can be purchased directly from Affymetrix. Product name rikDACF. P/N 510636. Keywords = chromosome VI tiling array
6	GPL337	RNA Processing	226	University of Toronto	2003-06-12		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, RNA Processing, Home-made polylysine substrate (J. DeRisi protocol) Hedge et al., 2000 spotting, cross-linking and blocking protocol, Virtek spotter, Stealth pins (TeleChem), 8 replicates of each spot per array, Oligonucleotide spike-in controls

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