Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(229)
  Primates
(2)
  Rodents
(120)
  Mammals
(4)
  Vertebrates
(7)
  Invertebrates
(4)
  Plants
(44)
  Bacteria
(10)
  Viruses
(0)
  Phages
(0)
  Unclassified
(3)
  All
(423)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(11)
  Tiling Array
(2)
  cDNA Array
(21)
  Oligo Array
(8)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(44)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Genetic complexity in yeast transcripts (GSE1990) [cDNA Array] FH_yeast_cDNA (GPL118) Fred Hutchinson Cancer Research Institute 2004-11-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae
1,856,270
(7,085 x 262)
262 by_platform
by_series
2 primary stem development (GSE2000) [Oligo Array] GBC_FOAR03_0001 (GPL1713) University of British Columbia 2004-11-22 Arabidopsis thaliana
Arabidopsis thaliana
576,000
(28,800 x 20)
20 by_platform
by_series
3 dSLAM (GSE1838) [Oligo Array] Hopkins Tag Array (GPL1444) Johns Hopkins University School of Medicine 2004-10-12 Saccharomyces cerevisiae
Saccharomyces cerevisiae
519,225
(22,575 x 23)
11 12 by_platform
by_series
4 Oryza Sativa and Magnaporthe Grisea LongSAGE (GSE1924) [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (japonica cultivar-group) (GPL775) University of Arizona 2004-11-03 Oryza sativa Japonica Group
Oryza sativa Japonica Group
506,644
(126,661 x 4)
4 by_platform
by_series
5 The Role of Stationary Phase in Gene Regulation and Mating Competence in Candida albicans (GSE1969) [Oligo Array] Soll albicans (GPL1519) The University of Iowa 2004-11-12 Candida albicans
Candida albicans
423,360
(14,112 x 30)
30 by_platform
by_series
6 Comparative transcriptome analysis of early interaction events in Scots pine root tissues following challenge (1dpi) (GSE2089) [cDNA Array] Pinus taeda cDNA (GPL1508) North Carolina State University 2004-12-20 Pinus sylvestris
Pinus sylvestris
331,344
(9,204 x 36)
36 by_platform
by_series
7 Simultaneous genotyping, gene expression measurement, and detection of allele-specific expression (GSE1975) [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) University of Washington 2004-11-13 Saccharomyces cerevisiae
Saccharomyces cerevisiae
261,380
(9,335 x 28)
28 by_platform
by_series
8 aerobic_to_anaerobic_shift (GSE1879) [Oligo Array] Custom Yeast Genomic 70-mer Oligonucleotide Microarray (GPL1535) University of Illinois at Urbana-Champaign 2004-10-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae
252,765
(5,617 x 45)
45 by_platform
by_series
9 Germination and appressorium formation in Magnaporthe grisea (GSE1945) [Oligo Array] Agilent-011842 Magnaporthe grisea Oligo Microarray G4137A (Feature Number version) (GPL889) CIFR, North Carolina State University 2004-11-08 Magnaporthe grisea
Magnaporthe grisea
225,750
(22,575 x 10)
10 by_platform
by_series
10 Ifh1 activates RP genes (GSE1934) [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) University of Geneva 2004-11-05 Saccharomyces cerevisiae
Saccharomyces cerevisiae
224,040
(9,335 x 24)
24 by_platform
by_series
11 Phosphomannose isomerase gene (PMI40) deletion strain cultivated in varying initial mannose concentrations (GSE1938) [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) Haartman Institute 2004-11-08 Saccharomyces cerevisiae
Saccharomyces cerevisiae
140,025
(9,335 x 15)
15 by_platform
by_series
12 Transcriptome changes in Emericella nidulans due to oxidative stress - primary experimental data (GSE2100) [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) University of Debrecen 2004-12-22 Emericella nidulans
Emericella nidulans
139,264
(4,352 x 32)
32 by_platform
by_series
13 CEA SGF:E00013#yap1 aft W303a HU response (GSE1914) [cDNA Array] CEA_SGF:AIW (GPL1531) Ecole Normale Supérieure 2004-11-02 Saccharomyces cerevisiae
Saccharomyces cerevisiae
138,240
(6,912 x 20)
20 by_platform
by_series
14 Overexpression of miR159a (GSE2078) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Max Planck Institute 2004-12-16 Arabidopsis thaliana
Arabidopsis thaliana
136,860
(22,810 x 6)
6 by_platform
by_series
15 Overexpression of miR156b and miR164b (floral apex) (GSE2079) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Max Planck Institute 2004-12-16 Arabidopsis thaliana
Arabidopsis thaliana
136,860
(22,810 x 6)
6 by_platform
by_series
16 Overexpression of miR164b and 172a (vegetative apex) (GSE2080) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Max Planck Institute 2004-12-16 Arabidopsis thaliana
Arabidopsis thaliana
136,860
(22,810 x 6)
6 by_platform
by_series
17 dSLAM (GSE1838) [Oligo Array] Yeast Deletions UpTag array (Rosetta Inpharmatics) (GPL1446) Johns Hopkins University School of Medicine 2004-10-12 Saccharomyces cerevisiae
Saccharomyces cerevisiae
112,752
(18,792 x 6)
5 1 by_platform
by_series
18 Transcriptional effects of the TOR2-controlled signaling function (GSE1814) [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) Biozentrum University of Basel 2004-10-01 Saccharomyces cerevisiae
Saccharomyces cerevisiae
112,020
(9,335 x 12)
12 by_platform
by_series
19 leu3p dependent transcription (GSE2076) [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) Delft University of Technology 2004-12-15 Saccharomyces cerevisiae
Saccharomyces cerevisiae
112,020
(9,335 x 12)
12 by_platform
by_series
20 CEA_SGF:E00014#HU_response_long-term (GSE1915) [cDNA Array] CEA_SGF:AIW (GPL1531) Ecole Normale Supérieure 2004-11-02 Saccharomyces cerevisiae
Saccharomyces cerevisiae
110,592
(6,912 x 16)
16 by_platform
by_series
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