Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(439)
  Primates
(2)
  Rodents
(190)
  Mammals
(12)
  Vertebrates
(10)
  Invertebrates
(58)
  Plants
(80)
  Bacteria
(82)
  Viruses
(1)
  Phages
(0)
  Unclassified
(1)
  All
(875)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(14)
  Tiling Array
(4)
  cDNA Array
(51)
  Oligo Array
(10)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(80)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Global Identification of Noncoding RNAs in S. cerevisiae (GSE4275) [Tiling Array] NASA Ames Research Center yeast 360K whole genome tiling (GPL3471) NASA Ames Research Center 2006-02-20 Saccharomyces cerevisiae
Saccharomyces cerevisiae
3,125,144
(390,643 x 8)
8 by_platform
by_series
2 A comparison of high density oligonucleotide and PCR-based array platforms for chIP chip in yeast (GSE4450) [Tiling Array] Snyder - Nimblegen S.cerevisiae WGT 50-60; 50-120 (GPL3541) The Australian Wine Research Institute 2006-03-13 Saccharomyces cerevisiae
Saccharomyces cerevisiae
2,735,289
(303,921 x 9)
9 by_platform
by_series
3 Cell Cycle-specific Expressions Are Modulated by Replication Checkpoint Kinases Rad3 and Cds1 in Fission Yeast (GSE4284) [Oligo Array] S. pombe 10K long oligonucleotide array (GPL1932) Genome Institute of Singapore 2006-02-21 Schizosaccharomyces pombe
Schizosaccharomyces pombe
1,557,564
(9,858 x 158)
158 by_platform
by_series
4 Expression data from rice under salinity stress (GSE4438) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) University of California 2006-03-10 Oryza sativa Indica Group
Oryza sativa Indica Group
1,377,144
(57,381 x 24)
24 by_platform
by_series
5 Heterosis (GSE4477) [cDNA Array] SAM1.1 (GPL2613) Iowa State University 2006-03-15 Zea mays
Zea mays
1,036,800
(19,200 x 54)
54 by_platform
by_series
6 HU treated cells vs wildtype untreated cells (elutriation centrifugation synchronized cells) (GSE4283) [Oligo Array] S. pombe 10K long oligonucleotide array (GPL1932) Genome Institute of Singapore 2006-02-21 Schizosaccharomyces pombe
Schizosaccharomyces pombe
867,504
(9,858 x 88)
88 by_platform
by_series
7 The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens (GSE4116) [Oligo Array] FHCRC Arabidopsis Oligo Array v1.0 (GPL1911) University of Washington 2006-01-29 Arabidopsis thaliana
Arabidopsis thaliana
847,168
(26,474 x 32)
32 by_platform
by_series
8 Soybean cultivars RCAT-Angora & Harovinton, embryo comparison and development (GSE4194) [cDNA Array] Keck Glycine max 18kA cDNA Prints101-108 (GPL3015) SCPFRC London 2006-02-07 Glycine max
Glycine max
806,400
(19,200 x 42)
40 2 by_platform
by_series
9 UV timecourse (GSE4509) [cDNA Array] Galbraith Lab Maize Master Unigene Microarray (GPL3553) University of North Carolina Wilmington 2006-03-21 Zea mays
Zea mays
767,448
(20,196 x 38)
38 by_platform
by_series
10 Genome-wide mapping of DNA re-replication in S. cerevisiae (GSE4181) [cDNA Array] Li UCSF yeast 14062 v1.0 (GPL3412) University of California, San Francisco 2006-02-06 Saccharomyces cerevisiae
Saccharomyces cerevisiae
703,100
(14,062 x 50)
50 by_platform
by_series
11 HU treated cells vs wildtype untreated cells (asynchronized cells) (GSE4280) [Oligo Array] S. pombe 10K long oligonucleotide array (GPL1932) Genome Institute of Singapore 2006-02-20 Schizosaccharomyces pombe
Schizosaccharomyces pombe
690,060
(9,858 x 70)
70 by_platform
by_series
12 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate (GSE4471) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) University of Aberdeen 2006-03-15 Oryza sativa
Oryza sativa
688,572
(57,381 x 12)
12 by_platform
by_series
13 Genome-wide Analysis of Re-replication Reveals Inhibitory Controls that Target Multiple Stages of Replication Initiation (GSE4487) [Oligo Array] Agilent Yeast Whole Genome ChIP-on-chip Microarray (GPL3499) MIT 2006-03-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae
663,600
(44,240 x 15)
15 by_platform
by_series
14 Genome-based approaches to understanding phosphorus deprivation responses and PSR1 control in Chlamydomonas reinhardtii. (GSE4568) [cDNA Array] CDS-Chlamy-1.1 (GPL3599) Stanford Microarray Database (SMD) 2006-03-28 Chlamydomonas reinhardtii
Chlamydomonas reinhardtii
571,680
(12,704 x 45)
45 by_platform
by_series
15 Time-course studies of three cell wall interfering drugs on gene expression in yeast (GSE4049) [Oligo Array] GenoToul/Biopuces operon_yeast22x22 (GPL3250) INSA 2006-01-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae
557,568
(15,488 x 36)
36 by_platform
by_series
16 Heterosis(II, Low scan) (GSE4473) [cDNA Array] SAM1.1 (GPL2613) Iowa State University 2006-03-15 Zea mays
Zea mays
518,400
(19,200 x 27)
27 by_platform
by_series
17 Soybean cultivars OX951 & OX736, seed coat permeablity comparison (GSE4276) [cDNA Array] Keck Glycine max 18kA cDNA Prints101-108 (GPL3015) SCPFRC London 2006-02-20 Glycine max
Glycine max
499,200
(19,200 x 26)
26 by_platform
by_series
18 GLA and profiling of proteasome, Spt23 and Mga2 (GSE4272) [cDNA Array] UofToronto-yeastORF-6.4k4 (GPL3464) Harvard Medical School 2006-02-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae
365,568
(13,056 x 28)
28 by_platform
by_series
19 Global gene expression in the maize shoot apical meristem (GSE4004) [cDNA Array] SAM1.0 (GPL2557) Iowa State University 2006-01-10 Zea mays
Zea mays
345,600
(19,200 x 18)
1 17 by_platform
by_series
20 Antagonism between two mechanisms of antifungal drug resistance (GSE4261) [cDNA Array] University Health Network Yeast 6.4K Array (Y6.4K) (GPL3458) University of Toronto 2006-02-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae
339,456
(13,056 x 26)
26 by_platform
by_series
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