Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(67)		   Primates
(1)		   Rodents
(38)		   Mammals
(3)		   Vertebrates
(10)		   Invertebrates
(67)		   Plants
(49)		   Bacteria
(32)		   Viruses
(0)		   Phages
(0)		   Unclassified
(8)		   All
(275)		  
  SAGE NlaIII
(1)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(2)		   Tiling Array
(4)		   cDNA Array
(29)		   Oligo Array
(12)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(0)		   All
(49)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL4613 NimbleGen Saccharomyces cerevisiae_ChIP whole-genome tiling array 386,231 Brandeis University 2006-11-30 NimbleGen Systems Inc. Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Tiling Array in situ oligonucleotide, NimbleGen Saccharomyces cerevisiae_ChIP whole-genome tiling array, NimbleGen catalog #C4214-00-01; whole genome 50mer tiling at 32 bp spacing.
2 GPL4656 Arabidopsis whole genome tiling array ver1.0 194,017 Yale University 2006-12-12 NASA Arabidopsis thaliana
Arabidopsis thaliana		 Tiling Array in situ oligonucleotide, Arabidopsis whole genome tiling array ver1.0, Oligo nucleotides 60mer in length are designed to represent single strand of the nonrepetitive DNA of the arabidopsis genome. The probes were selected from the Jan 22, 2004 TIGR release ver5.0 Arabdiopsis genome data
3 GPL4563 UW-Madison Saccharomyces cerevisiae tiling array_24mer oligos 190,062 University of Wisconsin - Madison 2006-11-15 Nimblegen Systems, Inc. Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Tiling Array in situ oligonucleotide, UW-Madison Saccharomyces cerevisiae tiling array_24mer oligos, ChIP-chip whole-genome tiling design. 24mer oligonucleotides.
4 GPL4592 [Soybean] Affymetrix Soybean Genome Array 61,170 Affymetrix, Inc. 2006-11-28 Affymetrix Glycine max
Glycine max		 GeneChip in situ oligonucleotide, [Soybean] Affymetrix Soybean Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Soybean Genome Array can be used to study gene expression of over 37,500 soybean (Glycine max) transcripts. The array also contains transcripts for studying two pathogens important for soybean research. Specifically, the array includes probe sets to detect approximately 15,800 transcripts for Phytophthora sojae (a water mold that commonly attacks soybean crops) as well as 7,500 Heterodera glycines (cyst nematode pathogen) transcripts.
5 GPL4474 SAGE:10:NlaIII:Gossypium hirsutum 52,025 2006-10-23 Gossypium hirsutum
Gossypium hirsutum		 SAGE NlaIII SAGE NlaIII, SAGE:10:NlaIII:Gossypium hirsutum, This is a virtual platform for SAGE libraries generated for Gossypium hirsutum using NlaIII as an anchor enzyme.
6 GPL4647 High-throughput sequenced small RNAs in Arabidopsis thaliana and its RISC complexes 44,003 Cold Spring Harbor Laboratory 2006-12-07 none Arabidopsis thaliana
Arabidopsis thaliana		 HT Sequencing other, High-throughput sequenced small RNAs in Arabidopsis thaliana and its RISC complexes, This dataset contains Arabidopsis thaliana endogenous small RNA sequences from total extraxts, AGO1 and AGO4 complexes. The sequences were obtained using high-throughput sequencing technology provided by 454. For technical details, see Qi, Y., He, X., Wang, X.J., Kohany, O., Jurka, J., and Hannon, G.J. 2006. Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation. Nature 443(7114): 1008-1012.
7 GPL4682 pombe 44K_v2 43,807 NCI 2006-12-19 Agilent Schizosaccharomyces pombe
Schizosaccharomyces pombe		 Tiling Array in situ oligonucleotide, pombe 44K_v2, Agilent 60mer oligo arrays tiling entire S. pombe genome across 3 chromsomes at 300bp interval alternately from the plus and minus strand. Choromosome locations in data table are based on assembled contigs at ftp://ftp.sanger.ac.uk/pub/yeast/pombe/Chromosome_contigs/OLD/Sep_15_2004/
8 GPL4570 Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv305.02.Z) 31,200 University of Arizona 2006-11-17 The Galbraith Laboratory, University of Arizona Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv305.02.Z),
9 GPL4623 ISU-Maize-Oligo1.1 30,368 Iowa State University 2006-12-04 Schnable Laboratory at Iowa State University(ISU) Zea mays
Zea mays		 Oligo Array spotted oligonucleotide, ISU-Maize-Oligo1.1,
10 GPL4650 Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 3.1.2.Y and AtOligio 3.2.2.Y) 29,952 University of Arizona 2006-12-07 The Galbraith Laboratory, University of Arizona Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 3.1.2.Y and AtOligio 3.2.2.Y), This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The Arabidopsis V1.0 AROS is designed from UniGene Build At. #4 (www.operon.com). This set comprises 26,000 oligonucleotides. Additional elements are printed as controls. This platform represents slides AtOligo 3.1.2.1-AtOligo 3.1.2.100 and AtOligo 3.2.2.1-AtOligo 3.2.2.100 (http://www.ag.arizona.edu/microarray).
11 GPL4648 Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.6.2.Y) 28,800 University of Arizona 2006-12-07 The Galbraith Laboratory, University of Arizona Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.6.2.Y), This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The Arabidopsis V1.0 AROS is designed from UniGene Build At. #4 (www.operon.com). This set comprises 26,000 oligonucleotides. Additional elements are printed as controls. This platform represents slides AtOligo 2.6.2.1-AtOligo 2.6.2.100 (http://www.ag.arizona.edu/microarray).
12 GPL4649 Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.9.2.Y) 28,800 University of Arizona 2006-12-07 The Galbraith Laboratory, University of Arizona Arabidopsis thaliana
Arabidopsis thaliana		 Oligo Array spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.9.2.Y), This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The Arabidopsis V1.0 AROS is designed from UniGene Build At. #4 (www.operon.com). This set comprises 26,000 oligonucleotides. Additional elements are printed as controls. This platform represents slides AtOligo 2.9.2.1-AtOligo 2.9.2.100 (http://www.ag.arizona.edu/microarray).
13 GPL4655 High density Euphorbia esula and Manihot esculenta array 25,392 US Dept. Agriculture 2006-12-11 Keck Center University of IL Urbana Manihot esculenta,Euphorbia esula
Manihot esculenta,Euphorbia esula		 cDNA Array spotted DNA/cDNA, High density Euphorbia esula and Manihot esculenta array, ~19000 unigene set from leafy spurge EST database supplemented with ~4000 cassava clones that had no obvious homology with any leafy spurge clone.
14 GPL4504 Eurogentec S. pombe IGR & ORF array (I040F) 22,176 Karolinska Inst 2006-10-26 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe IGR & ORF array (I040F),
15 GPL4509 Eurogentec S. pombe IGR+ORF array (J120E) 22,176 Karolinska Inst 2006-10-30 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe IGR+ORF array (J120E),
16 GPL4549 Eurogentec S. pombe IGR & ORF array (A260E) 22,176 Karolinska Inst 2006-11-10 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe IGR & ORF array (A260E),
17 GPL4675 Eurogentec S. pombe ORF array (C270F) 22,176 Karolinska Inst 2006-12-18 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe ORF array (C270F),
18 GPL4676 Eurogentec S. pombe ORF array (I040F) 22,176 Karolinska Inst 2006-12-19 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe ORF array (I040F),
19 GPL4678 Eurogentec S. pombe ORF array (B190D) 22,176 Karolinska Inst 2006-12-19 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe ORF array (B190D),
20 GPL4679 Eurogentec S. pombe ORF array (A260E) 22,176 Karolinska Inst 2006-12-19 Eurogentec AG Schizosaccharomyces pombe
Schizosaccharomyces pombe		 cDNA Array spotted DNA/cDNA, Eurogentec S. pombe ORF array (A260E),
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