| 1 |
GPL6176 |
Thalassiosira pseudonana NimbleGen 36mer oligo tiling array |
1,253,590 |
University of Washington |
2007-11-21 |
University Wisconsin, Madison; Biotechnology Center |
Thalassiosira pseudonana CCMP1335
 |
Tiling Array |
in situ oligonucleotide, Thalassiosira pseudonana NimbleGen 36mer oligo tiling array, The layout files for the individual chips that make up the 8-array set are linked below as supplementary files. |
| 2 |
GPL6331 |
NIBS-Arabidopsis-solexa-AGO sRNAs |
586,511 |
National Institute Of Biological Sciences, Beijing (NIBS) |
2007-12-27 |
|
Arabidopsis thaliana
 |
HT Sequencing |
other, NIBS-Arabidopsis-solexa-AGO sRNAs, Solexa, CSHL |
| 3 |
GPL6285 |
Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1 |
389,379 |
Yale University |
2007-12-14 |
NimbleGen microarray system |
Oryza sativa
 |
Oligo Array |
in situ oligonucleotide, Yale University MCDB Rice japonica NimbleGen 390K Oligo Array version1, |
| 4 |
GPL6286 |
Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1 |
388,734 |
Yale University |
2007-12-14 |
NimbleGen microarray system |
Oryza sativa
|
Oligo Array |
in situ oligonucleotide, Yale University MCDB Rice japonica NimbleGen 390K Oligo Array for H3K4Me2 and H3K4Me3 version1, |
| 5 |
GPL6279 |
S. pombe Nimblegen tiling array |
381,524 |
Genome Institute of Singapore |
2007-12-13 |
NimbleGen Systems Inc. |
Schizosaccharomyces pombe
 |
Tiling Array |
in situ oligonucleotide, S. pombe Nimblegen tiling array, The S. pombe genome sequences version 2004 (www.sanger.ac.uk) was used The positional information in the platform table reference the contig sequences in the supplementary files. |
| 6 |
GPL6335 |
Yale University MCDB Medicago truncatula NimbleGen 390K Oligo Array |
380,570 |
Yale University |
2007-12-31 |
NimbleGen microarray system |
Medicago truncatula
 |
Oligo Array |
in situ oligonucleotide, Yale University MCDB Medicago truncatula NimbleGen 390K Oligo Array, |
| 7 |
GPL6175 |
Thalassiosira pseudonana NimbleGen 36mer-oligo gene-specific array |
171,051 |
University of Washington |
2007-11-21 |
University Wisconsin, Madison; Biotechnology Center |
Thalassiosira pseudonana CCMP1335
|
Oligo Array |
in situ oligonucleotide, Thalassiosira pseudonana NimbleGen 36mer-oligo gene-specific array, Only probes matching Thalassiosira pseudonana genome version 3 are listed. Any probes matching more than 4 duplicate positions in Thalassiosira pseudonana genome version 3 are not represented here. |
| 8 |
GPL6266 |
hoptag07A |
70,824 |
Johns Hopkins Univ School of Medicine |
2007-12-11 |
NimbleGen Systems |
Saccharomyces cerevisiae
 |
Oligo Array |
in situ oligonucleotide, hoptag07A, Comprehensive array of the sequence TAGs ("barcodes") designed for incorporation into the Yeast Knockout strain collection. Updated from GEO accession GPL1444 to include the YKOv2 strains, five-fold replicate features for most sequences, and 3x more negative controls. Also includes selected TAGs from TAG resequencing projects. Two Platform supplementary files are included for data analysis. |
| 9 |
GPL6177 |
Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) |
45,220 |
Agilent Technologies |
2007-11-21 |
Agilent Technologies |
Arabidopsis thaliana
|
MPSS |
in situ oligonucleotide, Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version), The content on this microarray is derived from the ATH1 v.5 database of The Institute for Genomic Research (TIGR) and from the Arabidopsis MPSS database at the University of Delaware. Nearly 40,000 features represents 28,500 genes from TIGR and more than 10,000 unannotated transcripts from University of Delaware. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses. Arrays of this design have barcodes that begin with 16015059 or 2515059. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL7299. |
| 10 |
GPL6192 |
INRA Laccaria bicolor whole genome expression array 45K version 1 |
44,588 |
INRA |
2007-11-30 |
NimbleGen |
Laccaria bicolor S238N-H82
 |
Oligo Array |
in situ oligonucleotide, INRA Laccaria bicolor whole genome expression array 45K version 1, This is a condensed platform of the full array which has probes designed from gene models taken from the Joint Genome Institute Laccaria bicolor genome sequence version 1.0 |
| 11 |
GPL5991 |
Agilent-015239 Yeast Whole Genome ChIP-on-chip Microarray (G4493A) |
43,961 |
MIT |
2007-10-12 |
Agilent |
Saccharomyces cerevisiae
|
Oligo Array |
in situ oligonucleotide, Agilent-015239 Yeast Whole Genome ChIP-on-chip Microarray (G4493A), The Yeast Whole Genome ChIP-on-chip Microarray is specifically designed for location analysis of yeast (S. cerevisiae) DNA binding proteins by pairing chromatin immunoprecipitation (ChIP) with Agilent DNA microarrays. These sets deliver robust hybridization and reliable binding data with greater true binding events and fewer false positives. In addition, Agilent provides flexibility by offering both a high resolution yeast microarray as well a multi-array slide format. |
| 12 |
GPL5975 |
[AsprgDTUa520520F] Custom Affymetrix Aspergillus Chip DTU_3Aspergillus_45K_v1.0 |
43,776 |
Technical University of Denmark |
2007-10-09 |
Affymetrix |
Aspergillus niger,Aspergillus oryzae,Emericella nidulans
 |
GeneChip |
in situ oligonucleotide, [AsprgDTUa520520F] Custom Affymetrix Aspergillus Chip DTU_3Aspergillus_45K_v1.0, Type: CustomExpress. Feature size: 11-micron. Format: 49-7875 |
| 13 |
GPL6038 |
PICME Poplar 30K Series 2 |
30,000 |
Austrian Research Centers GmbH - ARC |
2007-10-22 |
Austrian Research Centers GmbH - ARC, PICME |
Populus trichocarpa x Populus deltoides,Populus tremula x Populus alba
 |
cDNA Array |
spotted DNA/cDNA, PICME Poplar 30K Series 2, This platform represents all slides of Series 2, i.e. 2_1_3 and 2_2_3, which are fully identical in their properties except the lot number. PICME Poplar 30K 2_1_3 uses lot number: 14204000B PICME Poplar 30K 2_2_3 uses lot numbers: 24704000B; 27404000B; 25204000B Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane Number of spots: 29.952 Number of pins/blocks: 48 Spottdistance in µm: 180 Recurrances spots/slide: 2 Number of spots vertical: 25 Number of spots horinzontal: 25 Vertical offset of first block in µm: 1200 Horizontal offset of first block in µm: 3150 |
| 14 |
GPL6032 |
PICME Poplar 28K Series 3 |
27,648 |
Austrian Research Centers GmbH - ARC |
2007-10-22 |
Austrian Research Centers GmbH - ARC, PICME |
Populus trichocarpa x Populus deltoides,Populus euphratica,Populus tremula x Populus alba
 |
cDNA Array |
spotted DNA/cDNA, PICME Poplar 28K Series 3, This platform represents all slides of Series 3, i.e. 3_1_4, 3_1_5 and 3_2_1, which are fully identical in their properties. Lot number: 10205000B Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane Number of spots: 27.648 Number of pins/blocks: 48 Spottdistance in µm: 180 Recurrances spots/slide: 1 Number of spots vertical: 24 Number of spots horinzontal: 24 Vertical offset of first block in µm: 1200 Horizontal offset of first block in µm: 3150 |
| 15 |
GPL6036 |
PICME Poplar 28K 4_1/4_3 |
27,648 |
Austrian Research Centers GmbH - ARC |
2007-10-22 |
Austrian Research Centers GmbH - ARC, PICME |
Populus trichocarpa x Populus deltoides,Populus euphratica,Populus tremula x Populus alba
|
cDNA Array |
spotted DNA/cDNA, PICME Poplar 28K 4_1/4_3, This platform represents all slides of the earlier Series 4, i.e. 4_1_4 and 4_3_2, which are fully identical in their properties except the lot number (Series 4_2_5 differs from this series and a separate platform exists). PICME Poplar 28K 4_1_4 uses lot number: 13705000B PICME Poplar 30K 4_3_2 uses lot number: 19505000B Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane Number of spots: 27.648 Number of pins/blocks: 48 Spottdistance in µm: 180 Recurrances spots/slide: 1 Number of spots vertical: 24 Number of spots horinzontal: 24 Vertical offset of first block in µm: 1200 Horizontal offset of first block in µm: 3150 |
| 16 |
GPL6046 |
PICME Poplar 28K Series 4_4/4_5 |
27,648 |
Austrian Research Centers GmbH - ARC |
2007-10-23 |
Austrian Research Centers GmbH - ARC, PICME |
Populus trichocarpa x Populus deltoides,Populus euphratica,Populus tremula x Populus alba
|
cDNA Array |
spotted DNA/cDNA, PICME Poplar 28K Series 4_4/4_5, This platform represents all slides of the later Series 4, i.e. 4_4 and 4_5, which are fully identical in their properties except the lot number. PICME Poplar 28K 4_4 uses lot numbers: 34705000B; 01606000B PICME Poplar 30K 4_5 uses lot number: 23706000 Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane Number of spots: 27.264 Number of pins/blocks: 48 Spottdistance in µm: 170 Recurrances spots/slide: 1 Number of spots vertical: 24 Number of spots horinzontal: 24 Vertical offset of first block in µm: 1200 Horizontal offset of first block in µm: 3150 |
| 17 |
GPL6147 |
CATMA_CIG_Arabidopsis_25K_V1 |
24,966 |
University of Lausanne |
2007-11-16 |
DNA Array Facility, Center for Integrative Genomics, Genopode, University of Lausanne |
Arabidopsis thaliana
|
Oligo Array |
mixed spotted oligonucleotide/cDNA, CATMA_CIG_Arabidopsis_25K_V1, |
| 18 |
GPL6010 |
CapitalBio Saccharomyces cerevisiae 23K oligo array |
23,184 |
College of Animal Science and Veterinary Medicine, Jilin University |
2007-10-15 |
CapitalBio Corporation |
Saccharomyces cerevisiae
|
Oligo Array |
spotted oligonucleotide, CapitalBio Saccharomyces cerevisiae 23K oligo array, |
| 19 |
GPL6085 |
TIGR PFGRC Aspergillus fumigatus v2 array designed primarily based on strain Af293 |
22,176 |
Faculty of Pharmaceutical Sciences of Ribeirao Preto |
2007-11-05 |
TIGR PFGRC (The Pathogen Functional Genomics Resource Center) |
Aspergillus fumigatus
 |
Oligo Array |
spotted oligonucleotide, TIGR PFGRC Aspergillus fumigatus v2 array designed primarily based on strain Af293, This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks. The condensed array layout file (ie, 1x representation of oligos) is linked below as a supplementary file. |
| 20 |
GPL6179 |
Eurogentec S. pombe IGR + ORF array (A290G and K060F) |
22,176 |
Gothenburg University |
2007-11-23 |
Eurogentec AG |
Schizosaccharomyces pombe
|
cDNA Array |
spotted DNA/cDNA, Eurogentec S. pombe IGR + ORF array (A290G and K060F), 22176 IGRs and ORFs were spotted in duplicate on a glass slide |