Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(545)		   Primates
(8)		   Rodents
(358)		   Mammals
(33)		   Vertebrates
(31)		   Invertebrates
(73)		   Plants
(201)		   Bacteria
(116)		   Viruses
(0)		   Phages
(0)		   Unclassified
(9)		   All
(1,376)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(39)		   Tiling Array
(17)		   cDNA Array
(74)		   Oligo Array
(62)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(8)		   Other
(1)		   All
(201)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole genome tiling arrays (GSE13584) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) Max Planck Institute for Developmental Biology 2008-11-13 Arabidopsis thaliana
Arabidopsis thaliana		 241,204,080
(6,184,720 x 39) 		39 by_platform
by_series
2 Genomic hybridization of Col, Van and reciprocal hybrids (GSE13620) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of Chicago 2008-11-16 Arabidopsis thaliana
Arabidopsis thaliana		 98,955,520
(6,184,720 x 16) 		16 by_platform
by_series
3 Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (GSE13814) [Tiling Array] AtTile1F to Arabidopsis Tiling 1.0F (GPL1979) University of California San Diego 2008-12-03 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
4 Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays (GSE13814) [Tiling Array] AtTile1R to Arabidopsis Tiling 1.0R (GPL1980) University of California San Diego 2008-12-03 Arabidopsis thaliana
Arabidopsis thaliana		 74,216,640
(6,184,720 x 12) 		12 by_platform
by_series
5 Genome-wide Analysis of Mono-, Di- and Trimethylation of Histone H3 Lysine 4 in Arabidopsis thaliana (GSE13613) [Tiling Array] Arabidopsis thaliana genome tiling 1.0R array (GPL7639) UCLA 2008-11-14 Arabidopsis thaliana
Arabidopsis thaliana		 17,257,194
(2,876,199 x 6) 		6 by_platform
by_series
6 A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies (GSE13161) [Oligo Array] Rice Genome Oligo Set V1.0 (GPL1829) Yale University 2008-10-10 Oryza sativa
Oryza sativa		 13,359,940
(60,727 x 220) 		4 4 32 180 by_platform
by_series
7 Synthetic Lethality (SLAM) Project Data (GSE14217) [Oligo Array] hoptag07A, abridged (GPL7873) Johns Hopkins U 2008-12-24 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 6,556,680
(6,071 x 1,080) 		7 5 4 1,064 by_platform
by_series
8 Synthetic Lethality (SLAM) Project Data (GSE14217) [Oligo Array] hoptag02A, abridged (GPL7872) Johns Hopkins U 2008-12-24 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 5,756,508
(5,868 x 981) 		6 3 972 by_platform
by_series
9 DIP-chip from Cbf1, Leu3, Pho2, Pho4, Rap1, Rox1, and Swi5 (GSE13751) [Tiling Array] NimbleGen 385k S. cerevisiae 32bp tiling array (GPL7699) UNC-Chapel Hill 2008-11-26 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 5,301,576
(378,684 x 14) 		14 by_platform
by_series
10 Gene expression profiling during storage root formation in sweet potato (GSE13809) [cDNA Array] PICME Sweetpotato 15K Series 1 (GPL6494) Austrian Research Centers GmbH 2008-12-03 Ipomoea batatas
Ipomoea batatas		 3,120,000
(30,000 x 104) 		104 by_platform
by_series
11 Trichoderma harzianum CECT 2413 expression in liquid basal medium or glucose-, chitin-, or tomato plant-containing media (GSE13776) [Oligo Array] Trichoderma spp. HDO microarray (GPL7702) Universidad de Salamanca 2008-12-01 Hypocrea lixii
Hypocrea lixii		 3,077,272
(384,659 x 8) 		8 by_platform
by_series
12 Atf1-mediated active gene response to H2O2 challenge. (GSE13053) [Tiling Array] S. pombe Nimblegen tiling array (GPL6279) Genome Institute of Singapore 2008-10-06 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 3,052,192
(381,524 x 8) 		8 by_platform
by_series
13 The Repertoire and Dynamics of Evolutionary Adaptations to Controlled Nutrient-Limited Environments in Yeast (GSE13435) [Oligo Array] Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) (GPL4131) University of Washington 2008-11-03 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 2,396,660
(45,220 x 53) 		53 by_platform
by_series
14 Effect of hypoxia on gene expression in Grey poplar (GSE13109) [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) University of Freiburg 2008-10-08 Populus tremula x Populus alba
Populus tremula x Populus alba		 1,842,390
(61,413 x 30) 		9 21 by_platform
by_series
15 Nutrient-Regulated Antisense and Intragenic RNAs Modulate a Signal Transduction Pathway (GSE13350) [GeneChip] Shirahige S.cerevisiae Tiling1.0F Array (GPL3723) The University of Tokyo 2008-10-24 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 1,822,800
(227,850 x 8) 		8 by_platform
by_series
16 Transcriptional profiling of root-knot nematode induced feeding sites in cowpea (Vigna unguiculata L. Walp) (GSE13631) [GeneChip] [Soybean] Affymetrix Soybean Genome Array (GPL4592) University of California-Riverside 2008-11-17 Vigna unguiculata
Vigna unguiculata		 1,712,760
(61,170 x 28) 		8 20 by_platform
by_series
17 Populus balsamifera developmental tissue series (GSE13990) [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) University of Toronto 2008-12-16 Populus balsamifera
Populus balsamifera		 1,658,151
(61,413 x 27) 		9 9 3 6 by_platform
by_series
18 Characterization of unique small RNA populations from rice grain (GSE13152) [HT Sequencing] Monsanto-rice-454-smallRNAs-high throughput sequencing (GPL7470) Monsanto 2008-10-10 Oryza sativa
Oryza sativa		 1,546,432
(386,608 x 4) 		1 3 by_platform
by_series
19 Hybrid_Poplar_H11-11_Leaves_Local_Stress_Response (GSE14228) [cDNA Array] Treenomix poplar 15.5K cDNA microarray (GPL5921) University of British Columbia 2008-12-29 Populus trichocarpa x Populus deltoides
Populus trichocarpa x Populus deltoides		 1,520,640
(17,280 x 88) 		88 by_platform
by_series
20 RBP40_arrays (GSE13135) [cDNA Array] Print_1270 (GPL7457) Stanford University 2008-10-09 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 1,497,600
(19,968 x 75) 		75 by_platform
by_series
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