Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(836)
  Primates
(10)
  Rodents
(586)
  Mammals
(39)
  Vertebrates
(49)
  Invertebrates
(184)
  Plants
(231)
  Bacteria
(113)
  Viruses
(2)
  Phages
(0)
  Unclassified
(8)
  All
(2,065)
 
  SAGE NlaIII
(1)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(86)
  Tiling Array
(13)
  cDNA Array
(22)
  Oligo Array
(63)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(46)
  Other
(0)
  All
(231)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Expression quantitative trait loci (eQTL) analysis of Brassica rapa under varying soil phosphorus (P) supplies (GSE27052) [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) University of Western Australia 2011-02-03 Brassica rapa
Brassica rapa
17,862,240
(105,072 x 170)
170 by_platform
by_series
2 Genome-wide gene expression atlas of maize inbred line B73 (GSE27004) [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) Iowa State University 2011-02-01 Zea mays
Zea mays
16,648,560
(92,492 x 180)
39 12 18 78 33 by_platform
by_series
3 Analysis of the Saccharomyces cerevisiae Pan-Genome Reveals a Pool of Copy Number Variants Distributed in Diverse Yeast Strains From Differing Industrial Environments. (GSE26689) [cDNA Array] Agilent 024417 Saccharomyces bayanus and Saccharomyces cerevisiae (SMD Print_1667) (GPL11575) Stanford University 2011-01-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae
6,171,648
(62,976 x 98)
98 by_platform
by_series
4 Clone History Shapes Populus Drought Responses (GSE27693) [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) University of Toronto 2011-03-04 Populus x canadensis
Populus x canadensis
4,421,736
(61,413 x 72)
72 by_platform
by_series
5 Co-transcriptional histone acetylation is a consequence of histone exchange (GSE28099) [Oligo Array] Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) [Probe Name version] (GPL10930) Stowers Institute for Medical Research 2011-03-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae
3,262,800
(43,504 x 75)
75 by_platform
by_series
6 Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis (GSE27484) [GeneChip] NCSU Payne_Aspergillus Flavus_22683_AFLAVUSa520391F [probe-level] (GPL13221) North Carolina State University - Center for Integrated Fungal Research 2011-02-24 Aspergillus flavus
Aspergillus flavus
2,856,422
(150,338 x 19)
19 by_platform
by_series
7 Comparison of gene expression in roots from Populus trichocarpa and Populus deltoides colonized with Laccaria bicolor (GSE26416) [Oligo Array] Populus 2.0 (GPL2699) INRA 2011-01-04 Populus trichocarpa
Populus trichocarpa
2,330,040
(388,340 x 6)
6 by_platform
by_series
8 Transcriptome Phase Distribution Analysis Reveals Diurnal Regulated Biological Processes and Key Pathways in Rice Flag Leaves and Seedling Leaves (GSE28124) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) Institute of Genetics and Developmental Biology, Chinese Academy of Sciences 2011-03-23 Oryza sativa
Oryza sativa
2,295,240
(57,381 x 40)
20 20 by_platform
by_series
9 Physiological genomics of response to soil drying in diverse Arabidopsis accessions (GSE27552) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: ATH1-121501.TAIR10] (GPL13230) The University of Texas at Austin 2011-02-27 Arabidopsis thaliana
Arabidopsis thaliana
2,142,800
(21,428 x 100)
100 by_platform
by_series
10 Gene expression during seed coat development in Arabidopsis (GSE27857) [Oligo Array] Arizona Arabidopsis Oligonucleotide Microarrays Version 3.0 (GPL13260) NRC-PBI 2011-03-09 Arabidopsis thaliana
Arabidopsis thaliana
1,989,272
(29,254 x 68)
68 by_platform
by_series
11 Coordination in the transcriptome and proteome of the diatom Thalassiosira pseudonana reveals a diverse phosphorus stress response (GSE28134) [SAGE NlaIII] SAGE:17:NlaIII:Thalassiosira pseudonana CCMP1335 (GPL13316) Woods Hole Oceanographic Institution 2011-03-23 Thalassiosira pseudonana CCMP1335
Thalassiosira pseudonana CCMP1335
1,562,420
(781,210 x 2)
2 by_platform
by_series
12 genome-wide gene expression profiling of rice pollen in defferent developmetn stages (GSE27988) [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) Institute of Botany, Chinese Academy of Sciences 2011-03-16 Oryza sativa
Oryza sativa
1,377,144
(57,381 x 24)
3 3 3 9 3 3 by_platform
by_series
13 cRNA hybridizations of 10 Spring annual accessions of Arabidopsis thaliana under well-watered and mild soil drying (GSE27548) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array [Custom CDF: ATH1-121501.TAIR10] (GPL13230) The University of Texas at Austin 2011-02-27 Arabidopsis thaliana
Arabidopsis thaliana
1,264,252
(21,428 x 59)
59 by_platform
by_series
14 Physiological genomics of response to soil drying in diverse Arabidopsis accessions (GSE27552) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) The University of Texas at Austin 2011-02-27 Arabidopsis thaliana
Arabidopsis thaliana
1,231,740
(22,810 x 54)
54 by_platform
by_series
15 Histone acetylation in wild-type and SET2 deletion yeast strains (GSE28097) [Oligo Array] Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) [Probe Name version] (GPL10930) Stowers Institute for Medical Research 2011-03-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae
1,044,096
(43,504 x 24)
24 by_platform
by_series
16 Histone H4 acetylation in wild-type, ASF1, SET2 and ASF1 SET2 deletion yeast strains (GSE28098) [Oligo Array] Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) [Probe Name version] (GPL10930) Stowers Institute for Medical Research 2011-03-22 Saccharomyces cerevisiae
Saccharomyces cerevisiae
1,044,096
(43,504 x 24)
24 by_platform
by_series
17 wt vs. mutants 09-DNA methylation and small RNAs (GSE26844) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2011-01-25 Arabidopsis thaliana
Arabidopsis thaliana
1,039,410
(34,647 x 30)
30 by_platform
by_series
18 Transcriptome analyses using the Chen Lab Cotton 25k oligo microarray (GSE27506) [Oligo Array] Chen Lab Cotton 25k oligo array (GPL6937) The University of Texas at Austin 2011-02-24 Gossypium hirsutum
Gossypium hirsutum
1,013,760
(25,344 x 40)
40 by_platform
by_series
19 ChIP-chip of the Cryptococcus neoformans transcription factor GAT201 and expression profiling of gat201KO (GSE27660) [Tiling Array] Cryptococcus neoformans 243K tiling chip (GPL13228) UC San Francisco 2011-03-03 Cryptococcus neoformans
Cryptococcus neoformans
974,016
(243,504 x 4)
4 by_platform
by_series
20 mutants versus wt - Transcriptome analysis of mutants impaired in post-transcriptional gene silencing (PTGS) (GSE26413) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2011-01-04 Arabidopsis thaliana
Arabidopsis thaliana
970,116
(34,647 x 28)
28 by_platform
by_series
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