Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(895)		   Primates
(11)		   Rodents
(576)		   Mammals
(31)		   Vertebrates
(64)		   Invertebrates
(154)		   Plants
(295)		   Bacteria
(104)		   Viruses
(0)		   Phages
(0)		   Unclassified
(10)		   All
(2,143)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(76)		   Tiling Array
(10)		   cDNA Array
(20)		   Oligo Array
(78)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(110)		   Other
(0)		   All
(295)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Euchromatic histone modifications associated with rice centromeres (GSE29597) [Tiling Array] NimbleGen Custom Rice Centromere Tiling Array (design:080925/080227) (GPL13660) UW-Madison 2011-05-27 Oryza sativa
Oryza sativa		 49,473,864
(687,137 x 72) 		72 by_platform
by_series
2 Genome-wide expression quantitative trait loci (eQTL) analysis in maize (GSE29964) [Oligo Array] Maize Pioneer Hi-Bred 105K mRNA Microarray (GPL10837) Pioneer Hi-Bred International 2011-06-14 Zea mays
Zea mays		 26,057,856
(105,072 x 248) 		248 by_platform
by_series
3 Allele-specific expression between Arabidopsis genus (GSE29037) [Tiling Array] Arabidopsis thaliana AtSNPtile 1 (GPL13483) Institute for Evolution and Biodiversity 2011-05-03 Arabidopsis thaliana
Arabidopsis thaliana		 23,864,064
(994,336 x 24) 		4 12 8 by_platform
by_series
4 Chromosome copy number variation in Cryptococcus neoformans influences virulence and occurs in isolates from AIDS patients (GSE29675) [Oligo Array] NimbleGen Cryptococcus H99 Whole Genome CGH array (12x135K) (GPL13662) The University of British Columbia 2011-06-01 Cryptococcus neoformans
Cryptococcus neoformans		 12,955,488
(134,953 x 96) 		96 by_platform
by_series
5 rilkit-eqtl analysis (random pair design). Tools to optimize the use of RIL populations for natural diversity studies and QTL cloning (GSE28791) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2011-04-21 Arabidopsis thaliana
Arabidopsis thaliana		 11,225,628
(34,647 x 324) 		324 by_platform
by_series
6 Chromosome copy number variation in Cryptococcus neoformans influences virulence and occurs in isolates from AIDS patients: clinal and environmental strains (GSE29671) [Oligo Array] NimbleGen Cryptococcus H99 Whole Genome CGH array (12x135K) (GPL13662) The University of British Columbia 2011-06-01 Cryptococcus neoformans
Cryptococcus neoformans		 10,661,287
(134,953 x 79) 		79 by_platform
by_series
7 Differential transcriptome analyses of three wheat genotypes in their response to Fusarium Head Blight and trichothecenes (GSE28973) [GeneChip] [wheat] Affymetrix Wheat Genome Array (GPL3802) Agriculture and Agri-Foods Canada 2011-04-29 Triticum aestivum
Triticum aestivum		 8,825,760
(61,290 x 144) 		144 by_platform
by_series
8 A Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays Between Kinase, Phosphatase and Isomerase Enzymes Along Genes (GSE29403) [Oligo Array] Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) (GPL4131) IRCM 2011-05-19 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 7,823,060
(45,220 x 173) 		16 157 by_platform
by_series
9 Structural variation among soybean cultivars (GSE28905) [Oligo Array] NimbleGen Soybean 700K CGH array (design 091113_Gmax_RS_CGH_HX3) (GPL11198) University of Minnesota 2011-04-28 Glycine max
Glycine max		 6,961,390
(696,139 x 10) 		10 by_platform
by_series
10 Heritable epigenetic variation among maize inbreds (GSE29099) [Oligo Array] NimbleGen 2.1M Maize Methylation Array (GPL13499) University of Minnesota 2011-05-05 Zea mays
Zea mays		 6,362,103
(2,120,701 x 3) 		3 by_platform
by_series
11 Tissue specific diurnal rhythm of transcripts and their regulation during herbivore attack in Nicotiana attenuata (GSE30287) [Oligo Array] Agilent-027451 Nicotiana attenuata 44K [Probe Name version] (GPL13527) Max-Planck-Institute for Chemical Ecology 2011-06-28 Nicotiana attenuata
Nicotiana attenuata		 5,833,422
(43,533 x 134) 		90 44 by_platform
by_series
12 Diverse Environmental Stresses Elicit Distinct Responses at the Level of Pre-mRNA Processing in Yeast. (GSE28919) [Oligo Array] GUTHRIE_YEAST_SPLICINGARRAY_v20040216a (GPL5052) Grinnell College 2011-04-28 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 5,465,088
(9,216 x 593) 		593 by_platform
by_series
13 Molecular characterization of the Rpp4 resistance response (GSE29741) [GeneChip] [Soybean] Affymetrix Soybean Genome Array (GPL4592) Iowa State University 2011-06-03 Glycine max
Glycine max		 4,404,240
(61,170 x 72) 		72 by_platform
by_series
14 Molecular characterization of the incompatible and compatible interaction of soybean rust disease in Rpp3-containing PI462312 line (GSE29740) [GeneChip] [Soybean] Affymetrix Soybean Genome Array (GPL4592) Iowa State University 2011-06-03 Glycine max
Glycine max		 3,303,180
(61,170 x 54) 		54 by_platform
by_series
15 Genome-wide transcript profiling associated with metabolic regulation of Poplar N storage and cycling (GSE29303) [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) Univ Maryland 2011-05-15 Populus trichocarpa
Populus trichocarpa		 2,947,824
(61,413 x 48) 		48 by_platform
by_series
16 Global transcriptome analysis of two ameiotic1 alleles in maize anthers: defining steps in meiotic entry and progression through prophase (GSE30149) [Oligo Array] Agilent-016047 Walbot Zea mays 4x44K array (GPL7444) Stanford University 2011-06-22 Zea mays
Zea mays		 2,780,864
(43,451 x 64) 		64 by_platform
by_series
17 Cell-type, developmental stage, and whole root responses to low pH and sulfur deficiency (GSE30166) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Duke University 2011-06-22 Arabidopsis thaliana
Arabidopsis thaliana		 2,554,720
(22,810 x 112) 		112 by_platform
by_series
18 multiplexage : dual-target hybridization microarray experiment-New developments towards a genetic and diagnosis use of plant mircoarrays (GSE29104) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.3 (GPL6403) INRA 2011-05-06 Arabidopsis thaliana
Arabidopsis thaliana		 2,434,600
(25,900 x 94) 		50 44 by_platform
by_series
19 Chromosome copy number variation in Cryptococcus neoformans influences virulence and occurs in isolates from AIDS patients: CBS7779 black and white strains (GSE29627) [Oligo Array] NimbleGen Cryptococcus H99 Whole Genome CGH array (12x135K) (GPL13662) The University of British Columbia 2011-05-31 Cryptococcus neoformans
Cryptococcus neoformans		 2,294,201
(134,953 x 17) 		17 by_platform
by_series
20 Insights into Transcriptional Regulatory Pathways on Systemic Communication under Flooding in Arabidopsis (GSE28885) [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) Academia Sinica 2011-04-27 Arabidopsis thaliana
Arabidopsis thaliana		 1,864,448
(29,132 x 64) 		32 32 by_platform
by_series
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