Gene Expression Omnibus (GEO) Overview

RSS

[ Top ] > [ 2011-10 ]

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(83)

Plants
(83)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(34)

Other
(1)

All
(83)

1 | 2 | 3 | 4 | 5 »

	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL15056	NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1]	2,160,801	University of California at Berkeley	2011-12-23	NimbleGen	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, NimbleGen Zilberman Arabidopsis HD2 array [080709_AT8_DZ_ChIP_HX1], TAIR 8 designname: 080709_AT8_DZ_ChIP_HX1 designid: 7848
2	GPL14974	NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (1 of 3)	385,991	Gregor Mendel Institute	2011-12-07	NimbleGen	Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (1 of 3), Genome build information 2006-08-18_ATH6_ChIP_1.ndf 2006-08-18_ATH6_ChIP_1.pos
3	GPL14975	NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (2 of 3)	385,991	Gregor Mendel Institute	2011-12-07	NimbleGen	Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, NimbleGen Arabidopsis thaliana Whole Genome Tiling Array 385K (2 of 3), Genome build information 2006-08-18_ATH6_ChIP_2.ndf 2006-08-18_ATH6_ChIP_2.pos
4	GPL14731	VTT_KB_Aspergillus nidulans v4.0_135K array	137,604	VTT Technical Research Centre of Finland	2011-10-13	NimbleGen	Aspergillus nidulans FGSC A4	Tiling Array	in situ oligonucleotide, VTT_KB_Aspergillus nidulans v4.0_135K array, Nimblegen design name 100608_Anid_KB_exp, Nimblegen design ID 531573. Expression + Tiling design for Aspergillus nidulans FGSC A4 using customer-provided transcript set. Expression portion -- selected 6 probes per transcript for 10546 out of 10597 transcripts (51 not found, 18 less than 6 probes per transcript, 114 duplicate probes/exemplars). 2 replicates of 63,130 probes for a final expression total of 126,260 probes. Tiling portion -- Used customer provided list of 36 long transcripts. Selected 5651 tiling 50-75mers and tiled at a 66bp interval (int=56/win=10/mm=1). 2 replicates on final array for 11302 tiling probes. Created .pos and probe_locations.gff to go with tiling portion. Annotation for these regions can be found in the .ngd file
5	GPL14887	NimbleGen S.cerevisiae CGH HX12 Array [090615_Scer_OA_CGH]	132,776	Cold Spring Harbor Laboratory	2011-11-15	NimbleGen	Saccharomyces cerevisiae	Oligo Array	in situ oligonucleotide, NimbleGen S.cerevisiae CGH HX12 Array [090615_Scer_OA_CGH], S. cerevisiae (release r.64). r64 dated Feb-3-2011 at SGD, dated April 2011 at NCBI. 12plex Array designname=090615_Scer_OA_CGH designid=10131
6	GPL14977	SCPFRC Phaseolus vugaris Custom Array 74K	73,855	Southern Crop Protection & Food Research Centre	2011-12-07	Plant Biotechnology Institute, National Research Council at Canada	Phaseolus vulgaris	Oligo Array	in situ oligonucleotide, SCPFRC Phaseolus vugaris Custom Array 74K,
7	GPL14727	POSTECH Arabidopsis thaliana 8x60K v1.0	62,976	Pohang University of Science and Technology	2011-10-12	Agilent	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, POSTECH Arabidopsis thaliana 8x60K v1.0,
8	GPL14721	Agilent-024664 chlamydomonas full genome	45,220	University of Bielefeld	2011-10-12	Agilent Technologies	Chlamydomonas reinhardtii	Oligo Array	in situ oligonucleotide, Agilent-024664 chlamydomonas full genome, Arrays of this design have barcodes that begin with 16024664 or 2524664. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
9	GPL14861	Agilent-014810 UMCU-Y44K-3.0	45,220	UMC Utrecht	2011-11-09	Holstege Lab, UMC Utrecht, The Netherlands	Saccharomyces cerevisiae	Oligo Array	in situ oligonucleotide, Agilent-014810 UMCU-Y44K-3.0, A-UMCU-Y44K-3.0 Agilent design ID: 014810
10	GPL14862	SUCEST-FUN Sugarcane 44k v1.0	45,220	Universidade de SÃƒÂ£o Paulo - USP	2011-11-09	Agilent Technologies	Saccharum officinarum	Oligo Array	spotted oligonucleotide, SUCEST-FUN Sugarcane 44k v1.0, CaneRegNet microarray (44k multiplex chip, agilent) was designed using an in-house developed method for empirical selection of best performing probes (60bp long oligomers) for each SAS (Sugarcane Assembled Sequence - Pre Selection Strategy based on gene function and categorization). Were designed two probes for each cluster SAS from SUCEST Project, one in the sense orientation and another one in the antisense orientation if available or one sense probe. The microarray contain 21902 oligo probes in sense and antisense orientation corresponding of a total of 14522 SAS.
11	GPL14904	Agilent-021623 Barley Gene Expression Microarray	45,220	Agilent Technologies	2011-11-18	Agilent Technologies	Hordeum vulgare	Oligo Array	in situ oligonucleotide, Agilent-021623 Barley Gene Expression Microarray, H. vulgare (Barley) Oligo Microarray Arrays of this design have barcodes that begin with 16021623 or 2521623. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
12	GPL14986	Agilent-028966 UTHORT Eustoma_EST v.1 (Feature Number version)	45,220	University of Tokyo	2011-12-09	Agilent Technologies	Eustoma exaltatum subsp. russellianum	Oligo Array	in situ oligonucleotide, Agilent-028966 UTHORT Eustoma_EST v.1 (Feature Number version), Arrays of this design have barcodes that begin with 16028966 or 2528966. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.""" The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
13	GPL15052	Agilent Lactuca sativa 44K	45,220	Agricultural Research Institute of the Hungarian Academy of Sciences	2011-12-21	Agilent	Lactuca sativa	Oligo Array	in situ oligonucleotide, Agilent Lactuca sativa 44K,
14	GPL14927	Agilent-021623 Barley Gene Expression Microarray [Probe name version]	43,663	Agilent Technologies	2011-11-23	Agilent Technologies	Hordeum vulgare	Oligo Array	in situ oligonucleotide, Agilent-021623 Barley Gene Expression Microarray [Probe name version], Feature number version: GPL14904 H. vulgare (Barley) Oligo Microarray Arrays of this design have barcodes that begin with 16021623 or 2521623. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
15	GPL14648	Agilent-017845 Rice	43,494	Ghent University	2011-10-03	Agilent	Oryza sativa	Oligo Array	in situ oligonucleotide, Agilent-017845 Rice, Oryza sativa subsp. Japonica Cultivar: Nipponbare
16	GPL14913	Agilent-025271 Zea mays Mais_array_v1 [Probe Name version]	41,838	Heinrich Heine University Duesseldorf	2011-11-22	Agilent Technologies	Zea mays	Oligo Array	in situ oligonucleotide, Agilent-025271 Zea mays Mais_array_v1 [Probe Name version], Mais array, v1, basierend auf Design 08/2009 Arrays of this design have barcodes that begin with 16025271 or 2525271. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
17	GPL15033	Arborea spruce 32K	34,992	UniversitÃƒÂ© Laval	2011-12-19	Vancouver Prostate Centre Microarray Facility	Picea glauca,Picea sitchensis	Oligo Array	spotted oligonucleotide, Arborea spruce 32K,
18	GPL14937	Agilent-022830 RIKEN_AT_sORF0902	34,415	RIKEN	2011-11-29	Agilent Technologies	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Agilent-022830 RIKEN_AT_sORF0902, This microarray targets 34546 mRNA-like transcripts inclusing 26254 annotated coding genes (TAIR8), 6,946 coding sORFs identified at Hanada et al (Genome Research 2007 17:632-640) and 1,346 novel transcripts verified by full length cDNAs. This microarray will be useful for scientists studying gene activity associated with various plant organ functions, stages of growth, and biotic and abiotic stresses. Arrays of this design have barcodes that begin with 16022830 or 2522830. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
19	GPL14926	Affymetrix AGRONOMICS Tiling Array [CDF: agronomics1_TAIR9_gene]	30,237	VIB-PSB	2011-11-23	Affymetrix	Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Affymetrix AGRONOMICS Tiling Array [CDF: agronomics1_TAIR9_gene], The TAIR9 CDF was used. Reference Platform with TAIR7 mapping is contained in GEO as GPL13479.
20	GPL14669	NimbleGen F verticillioides custom 14K array	28,326	U.S. Dept. of Agriculture	2011-10-04	NimbleGen	Gibberella moniliformis	Oligo Array	in situ oligonucleotide, NimbleGen F verticillioides custom 14K array, Array designed based on large EST library (Brown et al, Analysis of 87,000 expressed sequence tags reveals alternatively spliced introns in multiple genes of the fumonisin gene cluster, Fungla Genetics and Biology, 42:848-861) and the Fusarium comparative database at the Broad Institute (http://www.broad.mit.edu/annotation/genome/fusarium_verticillioides/MultiHome.html)

1 | 2 | 3 | 4 | 5 »