Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(743)		   Primates
(5)		   Rodents
(386)		   Mammals
(31)		   Vertebrates
(51)		   Invertebrates
(187)		   Plants
(209)		   Bacteria
(89)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(1,715)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(65)		   Tiling Array
(15)		   cDNA Array
(20)		   Oligo Array
(56)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(49)		   Other
(0)		   All
(209)		  
1   |   2   |   3   |   4   |   5      »      [11]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 adt08-01_upp-Trancriptome analysis of the Arabidopsis upp-1/2 mutants (GSE21148) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.2 (GPL4346) INRA 2010-03-31 Arabidopsis thaliana
Arabidopsis thaliana		 405,056
(25,316 x 16) 		16 by_platform
by_series
2 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer II (Arabidopsis thaliana) (GPL9302) UCLA 2010-03-31 Arabidopsis thaliana
Arabidopsis thaliana		 3
(0 x 3) 		3 by_platform
by_series
3 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) UCLA 2010-03-31 Arabidopsis thaliana
Arabidopsis thaliana		 1
(0 x 1) 		1 by_platform
by_series
4 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) UCLA 2010-03-31 Oryza sativa
Oryza sativa		 1
(0 x 1) 		1 by_platform
by_series
5 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer (Populus trichocarpa) (GPL10284) UCLA 2010-03-31 Populus trichocarpa
Populus trichocarpa		 1
(0 x 1) 		1 by_platform
by_series
6 Conservation and divergence of methylation patterning in plants and animals (GSE21152) [HT Sequencing] Illumina Genome Analyzer II (Chlamydomonas reinhardtii) (GPL9100) UCLA 2010-03-31 Chlamydomonas reinhardtii
Chlamydomonas reinhardtii		 1
(0 x 1) 		1 by_platform
by_series
7 Expression Differences in Ethanol Stress Response Between Saccharomyces cerevisiae Parent W303-1A Strain and its Two Ethanol Tolerant Mutants (GSE21120) [Oligo Array] Ramaciotti Centre Saccharomyces cerevisiae 13K MWGSc6Kv2 (GPL4873) CSIRO 2010-03-30 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 116,910
(6,495 x 18) 		6 12 by_platform
by_series
8 Effect of clp1 induction on b-dependent gene regulation (GSE21119) [GeneChip] [mpiUstilagoa] MPI UstilagoA (GPL3681) University of Karlsruhe 2010-03-30 Ustilago maydis
Ustilago maydis		 54,360
(6,795 x 8) 		8 by_platform
by_series
9 Effect of clp1 induction on rbf1-dependent gene regulation (GSE21121) [GeneChip] [mpiUstilagoa] MPI UstilagoA (GPL3681) University of Karlsruhe 2010-03-30 Ustilago maydis
Ustilago maydis		 27,180
(6,795 x 4) 		4 by_platform
by_series
10 Transcriptome changes in soybean seeds resulting from RNAi suppression of seed storage proteins (GSE21116) [HT Sequencing] Illumina Genome Analyzer (Glycine max) (GPL10267) USDA/ARS 2010-03-29 Glycine max
Glycine max		 2
(0 x 2) 		2 by_platform
by_series
11 The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei: a master regulator of carbon assimilation (GSE21072) [Tiling Array] ENS SGDB Trichoderma reesei Tr20_Tiling140_1 240k oligo array (GPL9076) École Normale Supérieure 2010-03-25 Hypocrea jecorina
Hypocrea jecorina		 1,908,704
(238,588 x 8) 		8 by_platform
by_series
12 Gene expression profiles of the egg and synergid cell in rice (GSE21074) [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) National Institute of Genetics 2010-03-25 Oryza sativa
Oryza sativa		 638,070
(42,538 x 15) 		9 3 3 by_platform
by_series
13 Expression profile of contrasting maize genotypes grown on acid and control soil (root tips) (GSE21070) [GeneChip] [Maize] Affymetrix Maize Genome Array (GPL4032) Marcelo Menossi 2010-03-25 Zea mays
Zea mays		 425,616
(17,734 x 24) 		24 by_platform
by_series
14 Endogenous overexpression of Poplar MYB186 increases trichome density, improves growth rate and insect pest resistance (GSE21061) [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) Queen's University 2010-03-25 Populus tremula x Populus alba
Populus tremula x Populus alba		 368,478
(61,413 x 6) 		6 by_platform
by_series
15 Arabidopsis thaliana/Hyaloperonospora arabidopsidis compatible interaction transcriptome (GSE21076) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) INRA 2010-03-25 Arabidopsis thaliana
Arabidopsis thaliana		 136,860
(22,810 x 6) 		4 2 by_platform
by_series
16 Transcriptome sequencing and comparative transcriptome analysis of the scleroglucan producer Sclerotium rolfsii (GSE21040) [HT Sequencing] 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) (GPL10247) Technische Universität München 2010-03-24 Athelia rolfsii
Athelia rolfsii		 109,690
(21,938 x 5) 		5 by_platform
by_series
17 Expression data from batch cultivations with the acidogenic Aspergillus niger wild type strain ATCC 1015 and the areB complete deletion strain constructed using ATCC 1015 as background strain with glucose or glycerol as carbon sources. (GSE21015) [GeneChip] [AsprgDTUa520520F] Custom Affymetrix Aspergillus Chip DTU_3Aspergillus_45K_v1.0 (GPL5975) Chalmers University of Technology 2010-03-23 Aspergillus niger
Aspergillus niger		 437,760
(43,776 x 10) 		10 by_platform
by_series
18 Tomato root transcriptome response to a nitrogen-enriched soil patch (GSE21020) [GeneChip] [Tomato] Affymetrix Tomato Genome Array (GPL4741) Donald Danforth Plant Science Center 2010-03-23 Solanum lycopersicum
Solanum lycopersicum		 91,881
(10,209 x 9) 		9 by_platform
by_series
19 Genomic analysis of replication profiles identifies RFCCtf18 as a key mediator of the replication stress response (GSE21014) [Tiling Array] [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array (GPL7250) Institute of Human Genetics - CNRS 2010-03-23 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 32
(0 x 32) 		32 by_platform
by_series
20 Infection with Salmonella or Pseudomonas or E. coli - Interactions between plants and human pathogenic bacteria. (GSE20996) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.3 (GPL6403) INRA 2010-03-22 Arabidopsis thaliana
Arabidopsis thaliana		 310,800
(25,900 x 12) 		12 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [11]
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