Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(0)
  Rodents
(40)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(76)
  Bacteria
(73)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(394)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(0)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(6)
  Oligo Array
(26)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(26)
  Other
(0)
  All
(76)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10272 AB SOLiD System 2.0 (Arabidopsis thaliana) 0 2010-03-30 Arabidopsis thaliana
Arabidopsis thaliana
HT Sequencing high-throughput sequencing, AB SOLiD System 2.0 (Arabidopsis thaliana),
2 GPL10273 AB SOLiD System 2.0 (Arabidopsis lyrata) 0 2010-03-30 Arabidopsis lyrata
Arabidopsis lyrata
HT Sequencing high-throughput sequencing, AB SOLiD System 2.0 (Arabidopsis lyrata),
3 GPL10267 Illumina Genome Analyzer (Glycine max) 0 2010-03-29 Glycine max
Glycine max
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Glycine max),
4 GPL10247 44K multiplex chip, Agilent (Tailor-made microarray, condensed version) 21,938 Technische Universität München 2010-03-24 imaGenes (Berlin, Germany) Athelia rolfsii
Athelia rolfsii
HT Sequencing spotted oligonucleotide, 44K multiplex chip, Agilent (Tailor-made microarray, condensed version), Tailor-made microarray (44K multiplex chip, Agilent) was designed by imaGenes (Berlin, Germany) using an in-house developed method for empirical selection of best performing probes for each gene (Pre Selection Strategy). Briefly, up to ten probes were designed for each of the 454 unigenes (60 bp long oligomers). The 244K Agilent test array was hybridized with pooled Cy3-labeled cRNAs gained form EPSmax13 and EPSmin17 cultures and (in average) two of the best performing oligos were selected for each unigene. Full physical array layout file linked as a supplementary file, GPL10247_44K_Design.txt. The oligonucleotide sequences can be found in the GPL10247_44K_Design.txt.gz file.
5 GPL10245 Illumina Genome Analyzer (Oryza nivara) 0 2010-03-23 Oryza nivara
Oryza nivara
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Oryza nivara),
6 GPL10246 Illumina Genome Analyzer (Oryza rufipogon) 0 2010-03-23 Oryza rufipogon
Oryza rufipogon
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Oryza rufipogon),
7 GPL10236 TIGR NSF rice oligonucleotide microarray A 22,176 University of Maine 2010-03-22 The Institute for Genomic Research (TIGR) Oryza sativa Japonica Group
Oryza sativa Japonica Group
Oligo Array spotted oligonucleotide, TIGR NSF rice oligonucleotide microarray A, NSF-45K array. About 45,000 oligonucleotides corresponding to ORFs encoded by the Nipponbare genome were printed on two separate glass slides (A and B).
8 GPL10237 TIGR NSF rice oligonucleotide microarray B 22,176 University of Maine 2010-03-22 The Institute for Genomic Research (TIGR) Oryza sativa Japonica Group
Oryza sativa Japonica Group
Oligo Array spotted oligonucleotide, TIGR NSF rice oligonucleotide microarray B, NSF-45K array. About 45,000 oligonucleotides corresponding to ORFs encoded by the Nipponbare genome were printed on two separate glass slides (A and B).
9 GPL10222 JCVI PFGRC Aspergillus fumigatus 22K v3.1 array designed primarily based on strain Af293 10,503 J. Craig Venter Institute 2010-03-17 JCVI PFGRC Aspergillus fumigatus
Aspergillus fumigatus
Oligo Array spotted oligonucleotide, JCVI PFGRC Aspergillus fumigatus 22K v3.1 array designed primarily based on strain Af293, This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks.
10 GPL10187 Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04] 5,483 Friedrich Miescher Institute for Biomedical Research 2010-03-16 Affymetrix Schizosaccharomyces pombe
Schizosaccharomyces pombe
Tiling Array in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04],
11 GPL10176 Oryza sativa 60-mer Oligonucleotide Platform 42,477 Guru Gobind Singh Indraprastha University 2010-03-15 Agilent Oryza sativa
Oryza sativa
Oligo Array in situ oligonucleotide, Oryza sativa 60-mer Oligonucleotide Platform,
12 GPL10177 Genotypic Candida albicans 15.7K 15,744 Genotypic Technology 2010-03-15 Genotypic Tech. Candida albicans
Candida albicans
Oligo Array in situ oligonucleotide, Genotypic Candida albicans 15.7K,
13 GPL10173 UNIFRBIO3 Chlamydomonas reinhardtii 10K v1.0 10,000 University of Freiburg 2010-03-12 Agilent Chlamydomonas reinhardtii
Chlamydomonas reinhardtii
Oligo Array spotted oligonucleotide, UNIFRBIO3 Chlamydomonas reinhardtii 10K v1.0,
14 GPL10167 SAGE:21:NlaIII:Oryza nivara 0 2010-03-12 Oryza nivara
Oryza nivara
SAGE NlaIII SAGE NlaIII, SAGE:21:NlaIII:Oryza nivara, This is a virtual platform for SAGE libraries generated for Oryza nivara using NlaIII as an anchor enzyme.
15 GPL10168 SAGE:21:NlaIII:Oryza rufipogon 0 2010-03-12 Oryza rufipogon
Oryza rufipogon
SAGE NlaIII SAGE NlaIII, SAGE:21:NlaIII:Oryza rufipogon, This is a virtual platform for SAGE libraries generated for Oryza rufipogon using NlaIII as an anchor enzyme.
16 GPL10165 UHN Yeast 6.4k v6 6,295 Institute for molecular biology and tumor research 2010-03-11 University Health Network Clinical Genomics Centre Microarray Centre Saccharomyces cerevisiae
Saccharomyces cerevisiae
cDNA Array spotted DNA/cDNA, UHN Yeast 6.4k v6,
17 GPL10166 SAGE:21:NlaIII:Oryza sativa 0 2010-03-11 Oryza sativa
Oryza sativa
SAGE NlaIII SAGE NlaIII, SAGE:21:NlaIII:Oryza sativa, This is a virtual platform for SAGE libraries generated for Oryza sativa using NlaIII as an anchor enzyme.
18 GPL10159 Agilent-025843 SurePrint G3 Rice CGH Microarray 4x180K (Feature Number version) 180,880 Agilent Technologies 2010-03-09 Agilent Technologies Oryza sativa
Oryza sativa
Oligo Array in situ oligonucleotide, Agilent-025843 SurePrint G3 Rice CGH Microarray 4x180K (Feature Number version), Rice (O.sativa) CGH 180K Microarray Arrays of this design have barcodes that begin with 16025843 or 2525843. Data table annotations based on build IRGSP5:v5:Jun2008. International Rice Genome Sequencing Project (IRGSP) Build 5: http://rgp.dna.affrc.go.jp/E/IRGSP/Build5/build5.html Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
19 GPL10148 Yale University Rice SNP Array 386K 386,809 Yale University 2010-03-08 NimbleGen Oryza sativa
Oryza sativa
Oligo Array in situ oligonucleotide, Yale University Rice SNP Array 386K, Genome build information
20 GPL10147 University of Heidelberg custom made sulfur 5.4K array 5,376 University of Heidelberg 2010-03-08 epoxy-coated Nexterion E slides (Peqlab), 50mer Oligonucleotides with aminolinker (Ocimum Biosolutions, Inc.) Arabidopsis thaliana
Arabidopsis thaliana
Oligo Array spotted oligonucleotide, University of Heidelberg custom made sulfur 5.4K array,
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