Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(102)

Plants
(75)

Phages
(0)

SAGE RsaI
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(26)

Other
(1)

All
(75)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL10272	AB SOLiD System 2.0 (Arabidopsis thaliana)	0		2010-03-30		Arabidopsis thaliana	HT Sequencing	high-throughput sequencing, AB SOLiD System 2.0 (Arabidopsis thaliana),
2	GPL10273	AB SOLiD System 2.0 (Arabidopsis lyrata)	0		2010-03-30		Arabidopsis lyrata	HT Sequencing	high-throughput sequencing, AB SOLiD System 2.0 (Arabidopsis lyrata),
3	GPL10267	Illumina Genome Analyzer (Glycine max)	0		2010-03-29		Glycine max	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Glycine max),
4	GPL10247	44K multiplex chip, Agilent (Tailor-made microarray, condensed version)	21,938	Technische UniversitÃƒÂ¤t MÃƒÂ¼nchen	2010-03-24	imaGenes (Berlin, Germany)	Athelia rolfsii	HT Sequencing	spotted oligonucleotide, 44K multiplex chip, Agilent (Tailor-made microarray, condensed version), Tailor-made microarray (44K multiplex chip, Agilent) was designed by imaGenes (Berlin, Germany) using an in-house developed method for empirical selection of best performing probes for each gene (Pre Selection Strategy). Briefly, up to ten probes were designed for each of the 454 unigenes (60 bp long oligomers). The 244K Agilent test array was hybridized with pooled Cy3-labeled cRNAs gained form EPSmax13 and EPSmin17 cultures and (in average) two of the best performing oligos were selected for each unigene. Full physical array layout file linked as a supplementary file, GPL10247_44K_Design.txt. The oligonucleotide sequences can be found in the GPL10247_44K_Design.txt.gz file.
5	GPL10245	Illumina Genome Analyzer (Oryza nivara)	0		2010-03-23		Oryza nivara	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Oryza nivara),
6	GPL10246	Illumina Genome Analyzer (Oryza rufipogon)	0		2010-03-23		Oryza rufipogon	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Oryza rufipogon),
7	GPL10236	TIGR NSF rice oligonucleotide microarray A	22,176	University of Maine	2010-03-22	The Institute for Genomic Research (TIGR)	Oryza sativa Japonica Group	Oligo Array	spotted oligonucleotide, TIGR NSF rice oligonucleotide microarray A, NSF-45K array. About 45,000 oligonucleotides corresponding to ORFs encoded by the Nipponbare genome were printed on two separate glass slides (A and B).
8	GPL10237	TIGR NSF rice oligonucleotide microarray B	22,176	University of Maine	2010-03-22	The Institute for Genomic Research (TIGR)	Oryza sativa Japonica Group	Oligo Array	spotted oligonucleotide, TIGR NSF rice oligonucleotide microarray B, NSF-45K array. About 45,000 oligonucleotides corresponding to ORFs encoded by the Nipponbare genome were printed on two separate glass slides (A and B).
9	GPL10222	JCVI PFGRC Aspergillus fumigatus 22K v3.1 array designed primarily based on strain Af293	10,503	J. Craig Venter Institute	2010-03-17	JCVI PFGRC	Aspergillus fumigatus	Oligo Array	spotted oligonucleotide, JCVI PFGRC Aspergillus fumigatus 22K v3.1 array designed primarily based on strain Af293, This set includes 9674 oligonucleotides, has 22176 spots distributed in 48 blocks.
10	GPL10187	Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04]	5,483	Friedrich Miescher Institute for Biomedical Research	2010-03-16	Affymetrix	Schizosaccharomyces pombe	Tiling Array	in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04],
11	GPL10176	Oryza sativa 60-mer Oligonucleotide Platform	42,477	Guru Gobind Singh Indraprastha University	2010-03-15	Agilent	Oryza sativa	Oligo Array	in situ oligonucleotide, Oryza sativa 60-mer Oligonucleotide Platform,
12	GPL10177	Genotypic Candida albicans 15.7K	15,744	Genotypic Technology	2010-03-15	Genotypic Tech.	Candida albicans	Oligo Array	in situ oligonucleotide, Genotypic Candida albicans 15.7K,
13	GPL10173	UNIFRBIO3 Chlamydomonas reinhardtii 10K v1.0	10,000	University of Freiburg	2010-03-12	Agilent	Chlamydomonas reinhardtii	Oligo Array	spotted oligonucleotide, UNIFRBIO3 Chlamydomonas reinhardtii 10K v1.0,
14	GPL10167	SAGE:21:NlaIII:Oryza nivara	0		2010-03-12		Oryza nivara	SAGE NlaIII	SAGE NlaIII, SAGE:21:NlaIII:Oryza nivara, This is a virtual platform for SAGE libraries generated for Oryza nivara using NlaIII as an anchor enzyme.
15	GPL10168	SAGE:21:NlaIII:Oryza rufipogon	0		2010-03-12		Oryza rufipogon	SAGE NlaIII	SAGE NlaIII, SAGE:21:NlaIII:Oryza rufipogon, This is a virtual platform for SAGE libraries generated for Oryza rufipogon using NlaIII as an anchor enzyme.
16	GPL10166	SAGE:21:NlaIII:Oryza sativa	0		2010-03-11		Oryza sativa	SAGE NlaIII	SAGE NlaIII, SAGE:21:NlaIII:Oryza sativa, This is a virtual platform for SAGE libraries generated for Oryza sativa using NlaIII as an anchor enzyme.
17	GPL10159	Agilent-025843 SurePrint G3 Rice CGH Microarray 4x180K (Feature Number version)	180,880	Agilent Technologies	2010-03-09	Agilent Technologies	Oryza sativa	Oligo Array	in situ oligonucleotide, Agilent-025843 SurePrint G3 Rice CGH Microarray 4x180K (Feature Number version), Rice (O.sativa) CGH 180K Microarray Arrays of this design have barcodes that begin with 16025843 or 2525843. Data table annotations based on build IRGSP5:v5:Jun2008. International Rice Genome Sequencing Project (IRGSP) Build 5: http://rgp.dna.affrc.go.jp/E/IRGSP/Build5/build5.html Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
18	GPL10148	Yale University Rice SNP Array 386K	386,809	Yale University	2010-03-08	NimbleGen	Oryza sativa	Oligo Array	in situ oligonucleotide, Yale University Rice SNP Array 386K, Genome build information
19	GPL10147	University of Heidelberg custom made sulfur 5.4K array	5,376	University of Heidelberg	2010-03-08	epoxy-coated Nexterion E slides (Peqlab), 50mer Oligonucleotides with aminolinker (Ocimum Biosolutions, Inc.)	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, University of Heidelberg custom made sulfur 5.4K array,
20	GPL10137	SAGE:22:Sau3A:Arabidopsis thaliana	0		2010-03-05		Arabidopsis thaliana	SAGE Sau3A	SAGE Sau3A, SAGE:22:Sau3A:Arabidopsis thaliana, This is a virtual platform for SAGE libraries generated for Arabidopsis thaliana using Sau3A as an anchor enzyme.

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