Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Mammals
(0)

Vertebrates
(0)

Invertebrates
(10)

Plants
(23)

Bacteria
(21)

Viruses
(0)

Phages
(0)

Unclassified
(1)

All
(90)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

Other
(0)

All
(23)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL10187	Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04]	5,483	Friedrich Miescher Institute for Biomedical Research	2010-03-16	Affymetrix	Schizosaccharomyces pombe	Tiling Array	in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04],
2	GPL10418	SMD Print_1329 Saccharomyces cerevisiae	19,968	Swiss Federal Institute of Technology	2010-05-17	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, SMD Print_1329 Saccharomyces cerevisiae,
3	GPL10713	IMUL-Candida glabrata 8x15k	5,215	University of Lausanne and University Hospital Center	2010-07-21	Agilent Technologies	Candida glabrata CBS 138	Oligo Array	in situ oligonucleotide, IMUL-Candida glabrata 8x15k, The nucleotide sequences of the 5283 C. glabrata ORFs and the mitochondrial genome (release 2) were downloaded from the GÃƒÂ©nolevure Consortium (http://www.genolevures.org/). Following the Agilent eArray Design guidelines, two separate probe sets for each ORF were designed, each consisting of 60 base oligonucleotides. The probe selection was performed using the GE Probe Design Tool; probes were filtered following their base composition and distribution, cross-hybridization potential and melting temperature to yield two probes sets representing each 5210 nuclear and 6 mitochondrial ORFs. These probes cover more than 98% of the nuclear genome and represent 6 out of the 8 mitochondrial protein-encoding genes. For quality control and normalization purposes, 103 probes were selected randomly and spotted 20 times throughout each array in addition to standard Agilent controls. C. glabrata custom arrays were manufactured in the 8x15k format by Agilent Technologies.
4	GPL13913	Eawag Chlamydomonas reinhardtii 44K v1.0 (16K unique probes)	16,343	Eawag	2011-07-13	Agilent	Chlamydomonas reinhardtii	Oligo Array	spotted oligonucleotide, Eawag Chlamydomonas reinhardtii 44K v1.0 (16K unique probes),
5	GPL15312	Agilent-017743 Physcomitrella custom 4x44K array	41,444	University of Lausanne	2012-03-06	Agilent Technologies	Physcomitrella patens	Oligo Array	in situ oligonucleotide, Agilent-017743 Physcomitrella custom 4x44K array,
6	GPL15635	Agilent custom Arabidopsis thaliana 45K	45,210	University of Zurich	2012-05-31	Agilent	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Agilent custom Arabidopsis thaliana 45K,
7	GPL15960	Agilent-037331 Copy_of_C. albicans assembly 21_017942 [ORF name version]	6,101	University of Lausanne and University Hospital Center	2012-08-20	Agilent Technologies	Candida albicans	Oligo Array	in situ oligonucleotide, Agilent-037331 Copy_of_C. albicans assembly 21_017942 [ORF name version],
8	GPL16290	[TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F	272,342	Philip Morris Products SA	2012-11-15	Affymetrix	Nicotiana tabacum	GeneChip	in situ oligonucleotide, [TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F, Custom single-channel exon array. From the analysis and annotation of the 1,271,256 Nicotiana tabacum fasta and quality files from methyl filtered genomic survey sequences (GSS) obtained from the TGI (http://www.pngg.org/tgi/) and ~56,000 ESTs available in public databases, an exon array with 272,342 probesets was designed (four probes per exon). The array covers ~90% of the tobacco gene space. The supplementary file 'GPL16290_TobArrays520623F.1lq.txt' includes probe sequences.
9	GPL1695	yeast intergenic array	6,814	University of Geneva	2004-11-08		Saccharomyces cerevisiae	Oligo Array	spotted oligonucleotide, yeast intergenic array, -Platform: amino-silane coated glass slides (GAPS II, Corning) -S. cerevisiae intergenic regions amplified from S288C genomic DNA (ResGen) using the intergenic region primer oligonucleotides (ResGen) (Harismendy et al. EMBO J. 22(18): 4738-4747, 2003). The primers allow the amplification of the sequence located on either side of elements such as open reading frames, tRNAs, small nuclear RNAs, Ty elements, solo ÃŽÂ´, etc. A complete description of the primers can be obtained on the web site (ftp://ftp.resgen.com/pub/genepairs/yeast_intergenic). -The PCR products were purified and spotted using an automated arrayer (MicroGrid II, BioRobotics)
10	GPL3235	rikDACFxMboI	1,250	University of Geneva	2005-12-06	Affymetrix	Saccharomyces cerevisiae	Tiling Array	in situ oligonucleotide, rikDACFxMboI, chromosome VI tiling array
11	GPL6147	CATMA_CIG_Arabidopsis_25K_V1	24,966	University of Lausanne	2007-11-16	DNA Array Facility, Center for Integrative Genomics, Genopode, University of Lausanne	Arabidopsis thaliana	Oligo Array	mixed spotted oligonucleotide/cDNA, CATMA_CIG_Arabidopsis_25K_V1,
12	GPL6419	Print_835	9,984	Swiss Federal Institute of Technology	2008-01-25	Stanford	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Print_835,
13	GPL6420	Print_626	10,752	Swiss Federal Institute of Technology	2008-01-25	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Print_626,
14	GPL6421	Print_627	9,600	Swiss Federal Institute of Technology	2008-01-25	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Print_627,
15	GPL6857	CHUV_CIG_Trichophyton rubrum_10K_V1	2,358	Centre Hospitalier Universitaire Vaudois	2008-05-13	DNA Array Facility, Center for Integrative Genomics, Genopode, University of Lausanne; Centre Hospitalier Universitaire Vaudois, Dermatology department, mycology laboratory	Trichophyton rubrum	cDNA Array	spotted DNA/cDNA, CHUV_CIG_Trichophyton rubrum_10K_V1, The Platform data table reflects a condensed representation of the array's replicate features. The full array layout representing all of the individual features is linked as a supplementary file at the foot of this record.
16	GPL7662	Saccharomyces cerevisiae 9.2K Print_1137	9,216	Swiss Federal Institute of Technology	2008-11-18	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Saccharomyces cerevisiae 9.2K Print_1137,
17	GPL7663	Saccharomyces cerevisiae 10.9K Print_1137	10,944	Swiss Federal Institute of Technology	2008-11-18	Center for Integrative Genomics, University of Lausanne, Switzerland	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Saccharomyces cerevisiae 10.9K Print_1137, Nexterion epoxy slides
18	GPL8125	Saccharomyces cerevisiae 10.9K Print_AG3	10,944	University of ZÃƒÂ¼rich	2009-01-28	Center for Integrative Genomics, University of Lausanne, Switzerland	Saccharomyces cerevisiae	Oligo Array	spotted oligonucleotide, Saccharomyces cerevisiae 10.9K Print_AG3, Identical to platform GPL7663
19	GPL8306	SMD Print_1381 Saccharomyces cerevisiae	10,944	Swiss Federal Institute of Technology	2009-03-16	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, SMD Print_1381 Saccharomyces cerevisiae,
20	GPL8546	SMD Print_1548 Saccharomyces cerevisiae	10,944	Swiss Federal Institute of Technology	2009-05-12	Stanford Functional Genomics Facility, Stanford School of Medicine	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, SMD Print_1548 Saccharomyces cerevisiae,

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