Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Plants
(2,170)

Bacteria
(1,636)

Viruses
(78)

SAGE RsaI
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(432)

Other
(26)

All
(2,170)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL9997	Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array	45,220	Stanford University	2010-02-01	Agilent	Zea mays,Ustilago maydis	Oligo Array	in situ oligonucleotide, Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array, designed by Walbot Lab
2	GPL999	Leber et al. (2004)	6,091	The University of Chicago	2004-02-17		Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Leber et al. (2004), Array data used in Leber et al. (2004)
3	GPL9989	Meyerowitz Lab Arabidopsis Operon Array Version 4	30,741	Center for Research in Agricultural Genomics	2010-01-29	Meyerowitz laboratory at the California Institute of Technology	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Meyerowitz Lab Arabidopsis Operon Array Version 4, This microarray is based on the Arabidopsis Genome Oligo Set Version 1.0 and on the Arabidopsis Genome Oligo Set Version 1.0 Upgrade (Operon, Alameda, CA). These sets consist of a total of 30,194 oligonucleotides.
4	GPL9984	Arabidopsis thaliana 43.7K Ath_Agilent_v2_Riechmann	43,700	Center for Research in Agricultural Genomics	2010-01-27	Agilent	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Arabidopsis thaliana 43.7K Ath_Agilent_v2_Riechmann,
5	GPL9983	Illumina Genome Analyzer II (Miscanthus x giganteus)	0		2010-01-26		Miscanthus x giganteus	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Miscanthus x giganteus),
6	GPL9982	Arabidopsis thaliana 32.7K Ath_Agilent_v1_Riechmann	32,672	Center for Research in Agricultural Genomics	2010-01-26	Agilent	Arabidopsis thaliana	Oligo Array	in situ oligonucleotide, Arabidopsis thaliana 32.7K Ath_Agilent_v1_Riechmann,
7	GPL9964	Custom Arabidopsis 22K 60-mer oligo array	21,080	King's College London	2010-01-22	Ceres Inc.	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Custom Arabidopsis 22K 60-mer oligo array, target transcript description (Aug 2001 annotation)
8	GPL9956	DPMB/AG Lab Agilent Rice array (4x44K) AMADID No. 15241	42,418	University of Delhi South Campus	2010-01-21	Agilent	Oryza sativa	cDNA Array	spotted DNA/cDNA, DPMB/AG Lab Agilent Rice array (4x44K) AMADID No. 15241,
9	GPL995	AR9.2K	9,216	Yale University School of Medicine	2004-02-12		Arabidopsis thaliana	cDNA Array	spotted DNA/cDNA, AR9.2K, Arabidopsis AR9.2K is a cDNA array generated from MSU clone set. The array contains 9,216 clones, single spot, 175 Ã‚Âµm center-to-center distances, 2 arrays per slide.
10	GPL9938	Ectocarpus siliculosus tiling array ChIP8	386,130	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP8, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
11	GPL9937	Ectocarpus siliculosus tiling array ChIP7	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP7, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
12	GPL9936	Ectocarpus siliculosus tiling array ChIP6	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP6, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
13	GPL9935	Ectocarpus siliculosus tiling array ChIP5	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP5, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
14	GPL9934	Ectocarpus siliculosus tiling array ChIP4	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP4, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
15	GPL9933	Ectocarpus siliculosus tiling array ChIP3	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP3, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
16	GPL9932	Ectocarpus siliculosus tiling array ChIP2	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP2, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
17	GPL9931	Ectocarpus siliculosus tiling array ChIP1	386,131	Systemix Institute	2010-01-15	Roche-Nimblegen	Ectocarpus siliculosus	Tiling Array	in situ oligonucleotide, Ectocarpus siliculosus tiling array ChIP1, 50-mer probes tiling the entire Ectocarpus siliculosus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
18	GPL9923	CombiMatrix 90K TomatArray 1.0	20,201	University of Naples Federico II	2010-01-14	University of Verona - Scientific and Technological Department - Plant Functional Genomics Centre	Solanum lycopersicum	Oligo Array	in situ oligonucleotide, CombiMatrix 90K TomatArray 1.0, 20,200 specific oligos (35-40mer) were designed on Tomato Gene Index Version 11 (LeGI v.11, June21, 2006) tentative consensus (TC) sequences by using the program design OligoArray 2.1 (Rouillard et al. 2003). As negative controls, nine bacterial oligonucleotides sequences provided by CombiMatrix were utilized. The 90K TomatArrayTM 1.0 was designed with four replicates of each probe randomly distributed across the array to allow measurement of the variability within the array. All the procedures provided were performed as indicated by CombiMatrix protocols available at the CombiMatrix website (www.combimatrix.com).
19	GPL9922	Illumina Genome Analyzer II (Volvox carteri)	0		2010-01-14		Volvox carteri	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Volvox carteri),
20	GPL9921	Illumina Genome Analyzer II (Uncinocarpus reesii)	0		2010-01-14		Uncinocarpus reesii	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Uncinocarpus reesii),

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