| 1 |
GPL90 |
[YG_S98] Affymetrix Yeast Genome S98 Array |
9,335 |
Affymetrix, Inc. |
2002-02-19 |
Affymetrix |
Saccharomyces cerevisiae
 |
GeneChip |
in situ oligonucleotide, [YG_S98] Affymetrix Yeast Genome S98 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32 |
| 2 |
GPL2529 |
[Yeast_2] Affymetrix Yeast Genome 2.0 Array |
10,928 |
Affymetrix, Inc. |
2005-06-09 |
Affymetrix |
Schizosaccharomyces pombe,Saccharomyces cerevisiae
 |
GeneChip |
in situ oligonucleotide, [Yeast_2] Affymetrix Yeast Genome 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Yeast Genome 2.0 Array contains probe sets to detect transcripts from both Saccharomyces cerevisiae and Schizosaccharomyces pombe, which are the two most commonly studied species of yeast. Providing comprehensive coverage of both species, the GeneChip Yeast Genome 2.0 Array includes approximately 5,744 probe sets for 5,841 of the 5,845 genes present in S. cerevisiae and 5,021 probe sets for all 5,031 genes present in S. pombe |
| 3 |
GPL166 |
[Ye6100SubD] Affymetrix Yeast Genome 6K SubD Array |
1,644 |
Affymetrix, Inc. |
2002-05-14 |
Affymetrix |
Saccharomyces cerevisiae
|
GeneChip |
in situ oligonucleotide, [Ye6100SubD] Affymetrix Yeast Genome 6K SubD Array, Affymetrix GeneChip Yeast Genome 6K SubD Array Ye6100subD. Based upon the September 1996 release of the Saccharomyces Genome Database (SGD) and contains probes for the approximately 6100 ORFs identified at that time. Annotations derived from Affymetrix 'Ye6100subD Probe Set Description' file (31 KB, 3/28/03) |
| 4 |
GPL165 |
[Ye6100SubC] Affymetrix Yeast Genome 6K SubC Array |
1,642 |
Affymetrix, Inc. |
2002-05-14 |
Affymetrix |
Saccharomyces cerevisiae
|
GeneChip |
in situ oligonucleotide, [Ye6100SubC] Affymetrix Yeast Genome 6K SubC Array, Affymetrix GeneChip Yeast Genome 6K SubC Array Ye6100subC. Based upon the September 1996 release of the Saccharomyces Genome Database (SGD) and contains probes for the approximately 6100 ORFs identified at that time. Annotations derived from Affymetrix 'Ye6100subC Probe Set Description' file (30 KB, 3/28/03) |
| 5 |
GPL164 |
[Ye6100SubB] Affymetrix Yeast Genome 6K SubB Array |
1,656 |
Affymetrix, Inc. |
2002-05-14 |
Affymetrix |
Saccharomyces cerevisiae
|
GeneChip |
in situ oligonucleotide, [Ye6100SubB] Affymetrix Yeast Genome 6K SubB Array, Affymetrix GeneChip Yeast Genome 6K SubB Array Ye6100subB. Based upon the September 1996 release of the Saccharomyces Genome Database (SGD) and contains probes for the approximately 6100 ORFs identified at that time. Annotations derived from Affymetrix 'Ye6100subB Probe Set Description' file (31 KB, 3/28/03) |
| 6 |
GPL163 |
[Ye6100SubA] Affymetrix Yeast Genome 6K SubA Array |
1,651 |
Affymetrix, Inc. |
2002-05-14 |
Affymetrix |
Saccharomyces cerevisiae
|
GeneChip |
in situ oligonucleotide, [Ye6100SubA] Affymetrix Yeast Genome 6K SubA Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Affymetrix GeneChip Yeast Genome 6K SubA Array Ye6100subA. Based upon the September 1996 release of the Saccharomyces Genome Database (SGD) and contains probes for the approximately 6100 ORFs identified at that time. Annotations derived from Affymetrix 'Ye6100subA Probe Set Description' file (31 KB, 3/28/03) Keywords = Yeast |
| 7 |
GPL3802 |
[wheat] Affymetrix Wheat Genome Array |
61,290 |
Affymetrix, Inc. |
2006-05-24 |
Affymetrix |
Triticum aestivum
 |
GeneChip |
in situ oligonucleotide, [wheat] Affymetrix Wheat Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array contains 61,127 probe sets representing 55,052 transcripts for all 42 chromosomes in the wheat genome. Sequence information for the GeneChip Wheat Genome Array includes public content from Triticum aestivum UniGene Build #38 (build date April 24, 2004). Also included are ESTs from the wheat species T. monococcum, T. turgidum, and Aegilops tauschii, and GenBank full-length mRNAs from all species through May 18, 2004. |
| 8 |
GPL1320 |
[Vitis_Vinifera] Affymetrix Vitis vinifera (Grape) Genome Array |
16,602 |
Affymetrix, Inc. |
2004-07-01 |
Affymetrix |
Vitis vinifera
 |
GeneChip |
in situ oligonucleotide, [Vitis_Vinifera] Affymetrix Vitis vinifera (Grape) Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Vitis vinifera Genome Array is the first array to provide comprehensive coverage of the V. vinifera genome. 14,000 V. vinifera transcripts and 1,700 transcripts from other Vitis species can be interrogated. Oligonucleotide probes complementary to each corresponding sequence are synthesized in situ on the arrays. Sixteen pairs of oligonucleotide probes are used to measure the level of transcription of each sequence represented on the GeneChip® Vitis vinifera (Grape) Genome Array. Sequences used in the design of the V. vinifera Genome Array were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 7, Oct 2003). Annotations derived from Affymetrix CSV file dated 6/23/2004 |
| 9 |
GPL4741 |
[Tomato] Affymetrix Tomato Genome Array |
10,209 |
Affymetrix, Inc. |
2007-01-11 |
Affymetrix |
Solanum lycopersicum
 |
GeneChip |
in situ oligonucleotide, [Tomato] Affymetrix Tomato Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The comprehensive array consists of over 10,000 L. esculentum probe sets to interrogate over 9,200 L. esculentum transcripts. Sequence information for this array was selected from public data sources including Lycopersicon esculentum UniGene Build #20 (October 3, 2004) and GenBank® mRNAs up to November 5, 2004. |
| 10 |
GPL16290 |
[TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F |
272,342 |
Philip Morris Products SA |
2012-11-15 |
Affymetrix |
Nicotiana tabacum
 |
GeneChip |
in situ oligonucleotide, [TobArrays520623F] Affymetrix Nicotiana tabacum TobArray520623F, Custom single-channel exon array. From the analysis and annotation of the 1,271,256 Nicotiana tabacum fasta and quality files from methyl filtered genomic survey sequences (GSS) obtained from the TGI (http://www.pngg.org/tgi/) and ~56,000 ESTs available in public databases, an exon array with 272,342 probesets was designed (four probes per exon). The array covers ~90% of the tobacco gene space. The supplementary file 'GPL16290_TobArrays520623F.1lq.txt' includes probe sequences. |
| 11 |
GPL10568 |
[SYNG010s520477] Affymetrix Helianthus annuus 94K |
94,691 |
INRA |
2010-06-18 |
Affymetrix |
Helianthus annuus
 |
GeneChip |
in situ oligonucleotide, [SYNG010s520477] Affymetrix Helianthus annuus 94K, |
| 12 |
GPL3844 |
[Sugar_Cane] Affymetrix Sugar Cane Genome Array |
8,387 |
Affymetrix, Inc. |
2006-06-06 |
Affymetrix |
Saccharum officinarum
 |
GeneChip |
in situ oligonucleotide, [Sugar_Cane] Affymetrix Sugar Cane Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Sugar Cane Genome Array contains 8,236 S. officinarum probe sets to monitor gene expression for approximately 6,024 distinct S. officinarum genes (including both UniGene and non-UniGene gene clusters). The sequence information for this array was created in collaboration with leading sugar cane researchers through the GeneChip® Consortia Program and was designed based on content from Saccharum officinarum UniGene Build 5 from August 27th, 2004 and GenBank® mRNAs up to November 2, 2004. The array contains 11 probe pairs per probe set and is a 169-format, 11-micron array design. |
| 13 |
GPL7715 |
[Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array |
0 |
Affymetrix, Inc. |
2008-12-01 |
Affymetrix |
Schizosaccharomyces pombe
 |
Tiling Array |
in situ oligonucleotide, [Sp20b_M] Affymetrix S. pombe Tiling 1.0FR Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® S. pombe Tiling 1.0FR Array is designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments. The S. pombe 1.0FR Array is a single array comprised of over 1.2 million perfect match/mismatch probe pairs tiled through the complete Schizosaccharomyces pombe genome. Sequence information for chromosomes 1 to 3 and telomere clones was drawn from the Wellcome Trust Sanger Institute (September 2004). Probes are tiled for both strands of the genome at an average of 20 base pair resolution, as measured from the central position of adjacent 25-mer oligos, creating an overlap of approximately 5 base pairs on adjacent probes. BPMAP and other files can be downloaded from the Affymetrix Web site below. |
| 14 |
GPL13674 |
[SoyGene-1_0-st] Affymetrix Soybean Gene 1.0 ST Array [transcript (gene) version] |
67,019 |
Affymetrix, Inc. |
2011-06-01 |
Affymetrix |
Glycine max
 |
GeneChip |
in situ oligonucleotide, [SoyGene-1_0-st] Affymetrix Soybean Gene 1.0 ST Array [transcript (gene) version], #%create_date=Mon Jun 6 16:03:37 2011 PDT #%chip_type=SoyGene-1_0-st-v1 #%lib_set_name=SoyGene-1_0-st #%lib_set_version=v1 #%genome-version=glyma1tm #%genome-version-ucsc=glyma1tm #%genome-lifted-method=psl-map.pl #%genome-lifted_from-version-ucsc=glyma1 #%netaffx-annotation-date=2011-06-21 #%netaffx-annotation-netaffx-build=32 |
| 15 |
GPL4592 |
[Soybean] Affymetrix Soybean Genome Array |
61,170 |
Affymetrix, Inc. |
2006-11-28 |
Affymetrix |
Glycine max
|
GeneChip |
in situ oligonucleotide, [Soybean] Affymetrix Soybean Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Soybean Genome Array can be used to study gene expression of over 37,500 soybean (Glycine max) transcripts. The array also contains transcripts for studying two pathogens important for soybean research. Specifically, the array includes probe sets to detect approximately 15,800 transcripts for Phytophthora sojae (a water mold that commonly attacks soybean crops) as well as 7,500 Heterodera glycines (cyst nematode pathogen) transcripts. |
| 16 |
GPL7250 |
[Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array |
0 |
Affymetrix, Inc. |
2008-09-04 |
Affymetrix |
Saccharomyces cerevisiae
|
Tiling Array |
in situ oligonucleotide, [Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html BPMAP and other files can be downloaded from the Affymetrix Web site below. |
| 17 |
GPL7249 |
[Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array |
0 |
Affymetrix, Inc. |
2008-09-04 |
Affymetrix |
Saccharomyces cerevisiae
|
Tiling Array |
in situ oligonucleotide, [Sc03b_MF] Affymetrix GeneChip S. cerevisiae Tiling 1.0F Array, Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html BPMAP and other files can be downloaded from the Affymetrix Web site below. |
| 18 |
GPL2025 |
[Rice] Affymetrix Rice Genome Array |
57,381 |
Affymetrix, Inc. |
2005-05-05 |
Affymetrix |
Oryza sativa
 |
GeneChip |
in situ oligonucleotide, [Rice] Affymetrix Rice Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html This array contains probes to query 51,279 transcripts representing two rice cultivars, with approximately 48,564 japonica transcripts and 1,260 transcripts representing the indica cultivar.This array contains probes to query 51,279 transcripts representing two rice cultivars, with approximately 48,564 japonica transcripts and 1,260 transcripts representing the indica cultivar. This unique design was created within the Affymetrix GeneChip Consortia Program and provides scientists with a single array that can be used for the study of rice. High-quality sequence data were derived from GenBank mRNAs, TIGR gene predictions, and the International Rice Genome sequencing project. The arrays were designed using NCBI UniGene Build #52, (May 7, 2004) incorporating predicted genes from GenBank and the TIGR Os1 v2 data set. (ftp.tigr.org FASTA, 89.3 MB) Annotations derived from Affymetrix CSV file dated 4/01/2005 |
| 19 |
GPL4359 |
[Poplar] Affymetrix Poplar Genome Array |
61,413 |
Affymetrix, Inc. |
2006-09-20 |
Affymetrix |
Populus sp.
 |
GeneChip |
in situ oligonucleotide, [Poplar] Affymetrix Poplar Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html In total, the Poplar Genome Array contains more than 61,000 probe sets representing over 56,000 transcripts and gene predictions. This array was designed based on content from UniGene Build #6 (March 16, 2005) and from GenBank® mRNAs and ESTs for all Populus species up to April 26, 2005. Additional array design content was derived from the predicted gene set v1.1 from the Populus genome project (P. trichocarpa), led by the U.S. Department of Energy and based at the Joint Genome Institute (JGI), Walnut Creek, CA (download date May 4, 2005). |
| 20 |
GPL3681 |
[mpiUstilagoa] MPI UstilagoA |
6,795 |
University of Karlsruhe |
2006-04-19 |
Affymetrix |
Ustilago maydis
 |
GeneChip |
in situ oligonucleotide, [mpiUstilagoa] MPI UstilagoA, Whole genome Affymetrix array, based on a map based assembly supplied by BayerCropScience. Information available at http://mips.gsf.de/genre/proj/ustilago/ |
|