Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,712)		   Tiling Array
(694)		   cDNA Array
(1,562)		   Oligo Array
(1,630)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(777)		   Other
(18)		   All
(6,479)		  
1   |   2   |   3   |   4   |   5      »      [324]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Comparative sequence analysis of plant small RNAs (GSE28755) [HT Sequencing] Illumina Genome Analyzer II (Zostera marina) (GPL14640) University of Delaware 2011-04-20 Zostera marina
Zostera marina		 3
(0 x 3) 		1 1 1 by_platform
by_series
2 High-throughput sequencing of small RNAs in Zostera marina (GSE32480) [HT Sequencing] Illumina Genome Analyzer II (Zostera marina) (GPL14640) University of Delaware 2011-09-29 Zostera marina
Zostera marina		 3
(0 x 3) 		1 1 1 by_platform
by_series
3 Plant virus detection microarray (GSE15837) [Oligo Array] Plant virus detection microarray (GPL8484) Chinese Academy of Inspection and Quarantine 2009-04-27 Zinnia violacea
Zinnia violacea		 5,865
(345 x 17) 		17 by_platform
by_series
4 Ginger and Turmeric microarray in different tissues at different developmental stages (GSE16982) [Oligo Array] Gang Lab (Agilent)_Z.Officinale/C.Longa_15K array (GPL8746) The University of Arizona 2009-07-07 Zingiber officinale
Zingiber officinale		 729,984
(15,208 x 48) 		2 31 15 by_platform
by_series
5 Analysis of Gene Expression in Ginger Tissues at Different Developmental Stages (GSE16734) [Oligo Array] Gang Lab (Agilent)_Z.Officinale/C.Longa_15K array (GPL8746) The University of Arizona 2009-06-20 Zingiber officinale
Zingiber officinale		 364,992
(15,208 x 24) 		1 14 9 by_platform
by_series
6 The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus (GSE12594) [GeneChip] Payne Aspergillus flavus 13,548 v1.0 (GPL7216) NC State University 2008-08-27 Zea mays,Aspergillus flavus
Zea mays,Aspergillus flavus		 81,288
(13,548 x 6) 		6 by_platform
by_series
7 Floral transition in maize infected with Sporisorium reilianum disrupts compatibility with this biotrophic fungal pathogen (GSE41916) [Oligo Array] Maize oligonucleotide array 46K version (GPL6438) Huangzhong agricultural university 2012-10-30 Zea mays subsp. mays
Zea mays subsp. mays		 184,512
(46,128 x 4) 		4 by_platform
by_series
8 Expression data from low nitrate culture in root in maize (GSE31231) [GeneChip] [miRNA-1_0] Affymetrix miRNA Array (GPL8786) Chinese Academy of Agricultural Sciences 2011-08-05 Zea mays subsp. mays
Zea mays subsp. mays		 70,335
(7,815 x 9) 		9 by_platform
by_series
9 miRNA expression data from low nitrate cultures in maize (GSE31492) [GeneChip] [miRNA-1_0] Affymetrix miRNA Array (GPL8786) Chinese Academy of Agricultural Sciences 2011-08-18 Zea mays subsp. mays
Zea mays subsp. mays		 70,335
(7,815 x 9) 		9 by_platform
by_series
10 Genome-wide expression quantitative trait loci (eQTL) analysis in maize (GSE29964) [Oligo Array] Maize Pioneer Hi-Bred 105K mRNA Microarray (GPL10837) Pioneer Hi-Bred International 2011-06-14 Zea mays
Zea mays		 26,057,856
(105,072 x 248) 		248 by_platform
by_series
11 Maize Comparative Genomic Hybridization (CGH) between B73, Mo17, M0022 (RIL), and M0023 (RIL) (GSE16938) [Oligo Array] NimbleGen Zea Mays 2.1M array (GPL8790) Iowa State University 2009-07-02 Zea mays
Zea mays		 19,116,261
(2,124,029 x 9) 		9 by_platform
by_series
12 Genomic Distribution of Maize Facultative Heterochromatin Marked by Trimethylation of H3K27 (GSE39456) [Oligo Array] NimbleGen 3x1.4M Maize Methylation Array (GPL15621) University of Minnesota 2012-07-18 Zea mays
Zea mays		 16,811,856
(1,400,988 x 12) 		2 2 8 by_platform
by_series
13 Genome-wide gene expression atlas of maize inbred line B73 (GSE27004) [Tiling Array] Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) (GPL12620) Iowa State University 2011-02-01 Zea mays
Zea mays		 16,648,560
(92,492 x 180) 		39 12 18 78 33 by_platform
by_series
14 Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm (GSE33730) [Oligo Array] NimbleGen 2.1M Maize Methylation Array (GPL13499) University of Minnesota 2011-11-16 Zea mays
Zea mays		 12,724,206
(2,120,701 x 6) 		6 by_platform
by_series
15 Variation in DNA methylation patterns more common among maize inbreds than among tissues (GSE38503) [Oligo Array] NimbleGen 2.1M Maize Methylation Array (GPL13499) University of Minnesota 2012-06-05 Zea mays
Zea mays		 12,724,206
(2,120,701 x 6) 		2 4 by_platform
by_series
16 Expression data from Zea mays developmental series. (GSE44743) [GeneChip] Affymetrix Maize Genome Array [CDF:SYNG007a520046] (GPL16720) University of Guelph 2013-02-28 Zea mays
Zea mays		 12,399,300
(82,662 x 150) 		33 24 48 30 6 9 by_platform
by_series
17 Small RNA SBS signatures identified from maize using Illumina's SBS technology (GSE12173) [Other] Small RNA SBS signatures indentified from maize using Illumina's SBS technnology (GPL7071) University of Delaware 2008-07-19 Zea mays
Zea mays		 10,773,106
(5,386,553 x 2) 		2 by_platform
by_series
18 Gene expression biomarkers provide sensitive indicators of in planta nitrogen status in Maize (GSE32361) [GeneChip] Affymetrix Zea mays A1ZMa520113 (GPL14616) Monsanto Co. 2011-09-24 Zea mays
Zea mays		 7,582,140
(84,246 x 90) 		90 by_platform
by_series
19 Pervasive gene content variation and copy number variation in both maize and its undomesticated progenitor (GSE23756) [Oligo Array] NimbleGen Zmays 120K CGH array [091006_NS_Zmays_CGH_exp] (GPL10846) University of Minnesota 2010-08-23 Zea mays
Zea mays		 6,937,322
(119,609 x 58) 		2 56 by_platform
by_series
20 Regulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids (GSE16136) [cDNA Array] SAM1.1a (GPL3333) Iowa State University 2009-05-15 Zea mays
Zea mays		 6,624,000
(19,200 x 345) 		345 by_platform
by_series
1   |   2   |   3   |   4   |   5      »      [324]
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