| 1 |
GPL14128 |
Illumina Genome Analyzer (Zygosaccharomyces bailii) |
0 |
|
2011-08-09 |
|
Zygosaccharomyces bailii
 |
HT Sequencing |
high-throughput sequencing, Illumina Genome Analyzer (Zygosaccharomyces bailii), |
| 2 |
GPL14640 |
Illumina Genome Analyzer II (Zostera marina) |
0 |
|
2011-09-29 |
|
Zostera marina
 |
HT Sequencing |
high-throughput sequencing, Illumina Genome Analyzer II (Zostera marina), |
| 3 |
GPL8746 |
Gang Lab (Agilent)_Z.Officinale/C.Longa_15K array |
15,208 |
The University of Arizona |
2009-06-19 |
Agilent |
Zingiber officinale,Curcuma longa
 |
Oligo Array |
spotted oligonucleotide, Gang Lab (Agilent)_Z.Officinale/C.Longa_15K array, Design Format: 8 X 15K (each slide has 8 blocks of 15K array) Number of sequences on each array: 1 (no duplicated spots in each array) Control Grid: IS-15744-8-V1_8x15K_Gx_EQC_V20060608 |
| 4 |
GPL9997 |
Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array |
45,220 |
Stanford University |
2010-02-01 |
Agilent |
Zea mays,Ustilago maydis
 |
Oligo Array |
in situ oligonucleotide, Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array, designed by Walbot Lab |
| 5 |
GPL13221 |
NCSU Payne_Aspergillus Flavus_22683_AFLAVUSa520391F [probe-level] |
150,338 |
North Carolina State University - Center for Integrated Fungal Research |
2011-02-24 |
Affymetrix |
Zea mays,Aspergillus flavus,Aspergillus oryzae
 |
GeneChip |
in situ oligonucleotide, NCSU Payne_Aspergillus Flavus_22683_AFLAVUSa520391F [probe-level], |
| 6 |
GPL8345 |
NCSU Payne_Aspergillus Flavus_22683_AFLAVUSa520391F |
22,683 |
North Carolina State University |
2009-03-25 |
Affymetrix |
Zea mays,Aspergillus flavus,Aspergillus oryzae
|
GeneChip |
in situ oligonucleotide, NCSU Payne_Aspergillus Flavus_22683_AFLAVUSa520391F, |
| 7 |
GPL7071 |
Small RNA SBS signatures indentified from maize using Illumina's SBS technnology |
5,386,553 |
University of Delaware |
2008-07-19 |
|
Zea mays
 |
Other |
other, Small RNA SBS signatures indentified from maize using Illumina's SBS technnology, |
| 8 |
GPL8790 |
NimbleGen Zea Mays 2.1M array |
2,124,029 |
Iowa State University |
2009-07-02 |
NimbleGen |
Zea mays
|
Oligo Array |
in situ oligonucleotide, NimbleGen Zea Mays 2.1M array, Probe sequences were aligned to Maize pseudomolecules from the Arizona Genome Institure (AGI) released on March, 20th, 2009 to determine their positions in the genome (positions are reflected in the Platform data table). Due to the fact that our array was designed using B73 genomic sequence and the high rate of polymorphism between B73 and Mo17, the CGH data violated the assumption for the regularly used Q-spline normalization to make two channels of hybridization intensities comparable. We used a subset of 840,289 probes that were known to have identical sequence in B73 and Mo17 (based on B73 BAC sequences and Mo17 WGS data) as a control set to obtain a best-fitting cubic spline function (Workman et al., 2002), assuming that most of these probes should have the same hybridization intensities after normalization. The spline function was then globally applied for all probes to normalize the two channels. After within-chip normalization, linear model analyses using LIMMA (Smyth 2004; Smyth 2005) were conducted for the data from all microarrays. The linear model for each probe included effects for dyes and genotypes (B73, Mo17, RIL M0022, and RIL M0023), and p-values were calculated to test for a signal difference between Mo17 and B73 genotypes as part of each linear model analysis. NimbleGen .ndf array description file linked below as supplementary file. |
| 9 |
GPL13499 |
NimbleGen 2.1M Maize Methylation Array |
2,120,701 |
University of Minnesota |
2011-05-05 |
NimbleGen |
Zea mays
|
Oligo Array |
in situ oligonucleotide, NimbleGen 2.1M Maize Methylation Array, Order ID#: OID29684 Native array description file: 100629_Zea_Mays_NS_CGH_HX1.ndf Native array description file: 100629_Zea_Mays_NS_CGH_HX1.pos The sequences of the oligonucleotides are available in the supplementary .ndf file. |
| 10 |
GPL15621 |
NimbleGen 3x1.4M Maize Methylation Array |
1,400,988 |
University of Minnesota |
2012-05-27 |
NimbleGen |
Zea mays
|
Oligo Array |
in situ oligonucleotide, NimbleGen 3x1.4M Maize Methylation Array, Design name: 110325_Zea_mays_NS_CGH Design ID: 550571 Native array description file: 110325_Zea_mays_NS_CGH.ndf Native array description file: 110325_Zea_mays_NS_CGH.pos Coordinates based on the B73 reference genome v2 physical positions (assembly RefGen_v2). Array was designed using probes initially found on the Maize 2.1M array platform (GPL13499). Probes were selected by being single-copy sequences within the maize RefGen_v2 masked genomic sequence. PROBE_ID values from this platform are conserved from their selections from GPL13499, allowing easy cross-comparison between experimental platforms. |
| 11 |
GPL10846 |
NimbleGen Zmays 120K CGH array [091006_NS_Zmays_CGH_exp] |
119,609 |
University of Minnesota |
2010-08-23 |
Roche NimbleGen |
Zea mays
|
Oligo Array |
in situ oligonucleotide, NimbleGen Zmays 120K CGH array [091006_NS_Zmays_CGH_exp], product # OID24389 |
| 12 |
GPL10837 |
Maize Pioneer Hi-Bred 105K mRNA Microarray |
105,072 |
Pioneer Hi-Bred International |
2010-08-18 |
Agilent |
Zea mays
|
Oligo Array |
spotted oligonucleotide, Maize Pioneer Hi-Bred 105K mRNA Microarray, The Agilent “105K†microarray chip was designed for maize genomic and transcript sequences in an effort to cover most maize genes with at least one 60-mer oligonucleotide probe. A pool of about 1.4 million public and private ESTs was consulted, derived from diverse tissues and treatments. The majority of the sequences was derived from the B73 genotype, but there were other genotypes represented. A higher quality subset of 1.1 million ESTs was used to generate a transitory transcript assembly of about 66K transcript sequences of average length 1.0 kb. At least one 60-mer oligo was designed for nearly all of these transcripts, but at times more than one oligo was designed per transcript. In an effort to identify other genes, or perhaps parts of genes, not represented in the 66K transcript set, and to fill out the array, various BLAST analyses were conducted against the then (in fall 2006) available public B73 genomic sequences, namely B73 BACs in GenBank and the AZM5 GSS Assembly dataset produced by TIGR. The resulting array design is believed to encompass most maize genes at least once, but there are certainly genes missing, others represented more than once, and sequence errors or genotypic variation in the dataset, or oligos designed to straddling intron-exon junctions, or to chimeric junctions inherent in ESTs and their assemblies, that may deter some oligos from functioning against a B73-specific transcript sample. Subsequent efforts to estimate the number of unique genes in this microarray suggest about 45,000 genes. This “105K†format Agilent microarray consists of 103,685 oligos designed to maize genic sequences. The balance of the space on the “105K†microarray (105,073 total oligos) was reserved for technical and internal hybridization controls. |
| 13 |
GPL12620 |
Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53) |
92,492 |
Iowa State University |
2011-02-01 |
NimbleGen Systems Inc. |
Zea mays
|
Tiling Array |
in situ oligonucleotide, Nimblegen Maize Whole-Genome Microarray 385K (VersionV1_4a.53), This platform version is based on gene-models (probe-sets) from Maize RefGen V1(4a.53) using the expression probes only. The original design is a custom NimbleGen design which used 385k probes. The array design has 330803 expression probes and 58339 tiling probes. Zea maize design from customer-provided regions with expression and tiling probes were placed into two different containers: 330803 expression probes (5 probes per gene, no additional replicates) and 58339 tiling probes (probe spacing of 45bp). |
| 14 |
GPL14616 |
Affymetrix Zea mays A1ZMa520113 |
84,246 |
Monsanto Co. |
2011-09-24 |
Affymetrix |
Zea mays
|
GeneChip |
in situ oligonucleotide, Affymetrix Zea mays A1ZMa520113, Affymetrix chip designed from EST sequences by Monsanto and Affymetrix. PM only |
| 15 |
GPL16720 |
Affymetrix Maize Genome Array [CDF:SYNG007a520046] |
82,662 |
University of Guelph |
2013-02-25 |
Affymetrix |
Zea mays
|
GeneChip |
in situ oligonucleotide, Affymetrix Maize Genome Array [CDF:SYNG007a520046], custom microarray with 82,661 probe-sets and 1,322,551 probes. The microarray platform was annotated by determining homology between probe sequences and the cDNA sequences for predicted transcripts from the filtered gene set of the 4a.53 release of the B73 genome using BLAST annotations as described in http://dx.doi.org/10.1104/pp.112.213231 The identifiers (in the CLONE_ID column) are gene model IDs from the public maize genome sequencing project: http://maizesequence.org http://maizegdb.org/ SYNG007a520046.cdf |
| 16 |
GPL11236 |
Maize oligo array version 1.4 slide set (slides A and B) |
54,492 |
Washington University |
2010-11-22 |
Maize Oligonucleotide Project, University of Arizona; www.maizearray.org |
Zea mays
|
Oligo Array |
spotted oligonucleotide, Maize oligo array version 1.4 slide set (slides A and B), |
| 17 |
GPL6438 |
Maize oligonucleotide array 46K version |
46,128 |
Maize Oligonucleotide Array Project |
2008-01-30 |
The University of Arizona |
Zea mays
|
Oligo Array |
spotted oligonucleotide, Maize oligonucleotide array 46K version, Spotted 70-mer oligo array on glass. The maize array set 46K version contains ~46,000 unique probes from maize |
| 18 |
GPL1462 |
SAGE:17:NlaIII:Zea mays |
44,870 |
|
2004-09-21 |
|
Zea mays
|
SAGE NlaIII |
SAGE NlaIII, SAGE:17:NlaIII:Zea mays, This is a virtual platform for longSAGE 17 libraries generated for Zea mays using NlaIII as an anchor enzyme. Platform_anchor: NlaIII |
| 19 |
GPL7209 |
Zea mays 1x44K Agilent array - designed by Walbot Lab |
44,290 |
Stanford University |
2008-08-26 |
Agilent |
Zea mays
|
Oligo Array |
in situ oligonucleotide, Zea mays 1x44K Agilent array - designed by Walbot Lab, |
| 20 |
GPL6460 |
Universidad Nacional de Rosario Zea Mays 43K |
43,451 |
Universidad Nacional de Rosario |
2008-02-05 |
Agilent Technologies |
Zea mays
|
Oligo Array |
in situ oligonucleotide, Universidad Nacional de Rosario Zea Mays 43K, |