Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(102)		   Primates
(4)		   Rodents
(40)		   Mammals
(13)		   Vertebrates
(33)		   Invertebrates
(30)		   Plants
(75)		   Bacteria
(73)		   Viruses
(4)		   Phages
(0)		   Unclassified
(18)		   All
(392)		  
  SAGE NlaIII
(4)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(2)		   Tiling Array
(10)		   cDNA Array
(5)		   Oligo Array
(26)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(26)		   Other
(1)		   All
(75)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9997 Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array 45,220 Stanford University 2010-02-01 Agilent Zea mays,Ustilago maydis
Zea mays,Ustilago maydis		 Oligo Array in situ oligonucleotide, Agilent/WalbotLab Zea mays + Ustilago maydis (dual organism) 4x44K array, designed by Walbot Lab
2 GPL9922 Illumina Genome Analyzer II (Volvox carteri) 0 2010-01-14 Volvox carteri
Volvox carteri		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Volvox carteri),
3 GPL10024 University of Cape Town Cowpea 9K drought stress SSH library 9,216 University of Pretoria 2010-02-10 ACGT Microarray Facility, University of Pretoria, Pretoria, South Africa (http://www.microarray.up.ac.za ) Vigna unguiculata
Vigna unguiculata		 cDNA Array spotted DNA/cDNA, University of Cape Town Cowpea 9K drought stress SSH library,
4 GPL9921 Illumina Genome Analyzer II (Uncinocarpus reesii) 0 2010-01-14 Uncinocarpus reesii
Uncinocarpus reesii		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Uncinocarpus reesii),
5 GPL10120 Solanum tuberosum 12.3K RLP array Version IV 12,288 AIT Austrian Institute of Technology GmbH 2010-03-02 AIT Austrian Institute of Technology GmbH Solanum tuberosum
Solanum tuberosum		 cDNA Array spotted DNA/cDNA, Solanum tuberosum 12.3K RLP array Version IV,
6 GPL9923 CombiMatrix 90K TomatArray 1.0 20,201 University of Naples Federico II 2010-01-14 University of Verona - Scientific and Technological Department - Plant Functional Genomics Centre Solanum lycopersicum
Solanum lycopersicum		 Oligo Array in situ oligonucleotide, CombiMatrix 90K TomatArray 1.0, 20,200 specific oligos (35-40mer) were designed on Tomato Gene Index Version 11 (LeGI v.11, June21, 2006) tentative consensus (TC) sequences by using the program design OligoArray 2.1 (Rouillard et al. 2003). As negative controls, nine bacterial oligonucleotides sequences provided by CombiMatrix were utilized. The 90K TomatArrayTM 1.0 was designed with four replicates of each probe randomly distributed across the array to allow measurement of the variability within the array. All the procedures provided were performed as indicated by CombiMatrix protocols available at the CombiMatrix website (www.combimatrix.com).
7 GPL9918 Illumina Genome Analyzer II (Selaginella moellendorffii) 0 2010-01-14 Selaginella moellendorffii
Selaginella moellendorffii		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Selaginella moellendorffii),
8 GPL10187 Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04] 5,483 Friedrich Miescher Institute for Biomedical Research 2010-03-16 Affymetrix Schizosaccharomyces pombe
Schizosaccharomyces pombe		 Tiling Array in situ oligonucleotide, Affymetrix S. pombe Tiling 1.0FR Array [custom CDF: Sp20b_M_v04],
9 GPL9854 Illumina Genome Analyzer (Schizosaccharomyces pombe) 0 2010-01-04 Schizosaccharomyces pombe
Schizosaccharomyces pombe		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Schizosaccharomyces pombe),
10 GPL10045 Agilent Yeast 8X15K conversion (Agilent-016322) 15,744 University of Washington 2010-02-12 Agilent Technologies Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Oligo Array in situ oligonucleotide, Agilent Yeast 8X15K conversion (Agilent-016322), Yeast 8X15K conversion Agilent-016322
11 GPL10104 Custom Agilent Saccharomyces cerevisiae 8x15K Yeast_LH_03 15,744 Agriculture & Agri-Food Canada (AAFC) 2010-02-25 Agilent Technologies Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Oligo Array spotted oligonucleotide, Custom Agilent Saccharomyces cerevisiae 8x15K Yeast_LH_03,
12 GPL10084 Vanderbilt University/NimbleGen Saccharomyces cerevisiae 11470 Array 11,470 Vanderbilt University 2010-02-22 Nimblegen Saccharomyces cerevisiae
Saccharomyces cerevisiae		 Oligo Array in situ oligonucleotide, Vanderbilt University/NimbleGen Saccharomyces cerevisiae 11470 Array,
13 GPL10039 Yeast_16p_DNA_Feb_2010 6,185 Universitat Autonoma de Barcelona 2010-02-12 DNA microarray facility. Dept. Biochemistry, Universitat Autonoma de Barcelona Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, Yeast_16p_DNA_Feb_2010,
14 GPL10079 Illumina Genome Analyzer (Saccharomyces bayanus x Saccharomyces cerevisiae) 0 2010-02-19 Saccharomyces bayanus x Saccharomyces cerevisiae
Saccharomyces bayanus x Saccharomyces cerevisiae		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Saccharomyces bayanus x Saccharomyces cerevisiae),
15 GPL9917 Illumina Genome Analyzer II (Postia placenta) 0 2010-01-14 Postia placenta
Postia placenta		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Postia placenta),
16 GPL10109 Illumina Genome Analyzer (Porphyra yezoensis) 0 2010-02-25 Porphyra yezoensis
Porphyra yezoensis		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer (Porphyra yezoensis),
17 GPL10115 Agilent Whole_genome_Podospora anserina_v.2_4X44K (oligonucleotides microarray development) 45,220 Institut de Génétique et Microbiologie UMR 8621 2010-03-01 Agilent Podospora anserina
Podospora anserina		 Oligo Array in situ oligonucleotide, Agilent Whole_genome_Podospora anserina_v.2_4X44K (oligonucleotides microarray development), Podospora anserina Oligonucleotide Microarray by Agilent Technologies. Intermediate microarray with 4 different probes per CDS used to select one probe per CDS to develop a custom expression microarray. Barecodes of arrays with this design are 251636610001 to 251636610005. See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php
18 GPL10116 Agilent-018343 Whole Podospora anserina Genome Microarray v.3 4x44K 45,220 Institut de Génétique et Microbiologie UMR 8621 2010-03-01 Agilent Podospora anserina
Podospora anserina		 Oligo Array in situ oligonucleotide, Agilent-018343 Whole Podospora anserina Genome Microarray v.3 4x44K, Podospora anserina 60 mers Oligonucleotide Microarray by Agilent Technologies : microarray with a unique probe per CDS. The final array design contained 10,539 probes for nuclear CDS and 17 mitochondrial CDS probes. Each probe was replicated four times on each 44K array. See Podopora anserina database's web site at http://podospora.igmors.u-psud.fr/padb/index.php
19 GPL9858 MiRPlants-12.0 plus 100 maize smRNAs 3,968 Universidad Nacional de Rosario 2010-01-06 LC Sciences Physcomitrella patens,Pinus taeda,Gossypium hirsutum,Populus trichocarpa,Arabidopsis thaliana,Brassica napus,Glycine max,Medicago truncatula,Solanum lycopersicum,Oryza sativa,Saccharum officinarum,Sorghum bicolor,Triticum aestivum,Zea mays,Vitis vinifera,
Physcomitrella patens,Pinus taeda,Gossypium hirsutum,Populus trichocarpa,Arabidopsis thaliana,Brassica napus,Glycine max,Medicago truncatula,Solanum lycopersicum,Oryza sativa,Saccharum officinarum,Sorghum bicolor,Triticum aestivum,Zea mays,Vitis vinifera,		 Oligo Array in situ oligonucleotide, MiRPlants-12.0 plus 100 maize smRNAs, LC Sciences provides a genome-wide microRNA (miRNA) expression profiling service using µParaflo® technology and proprietary probe design, which enable highly sensitive and specific direct detection of miRNAs. They have standard arrays for mature miRNA of all species available in the latest version of the Sanger miRBase database. A proprietary µParaflo® microfluidic chip is used. The microfluidic technology produces a uniform distribution of the sample solutions on the array and enhances binding reactions and stringency wash processes. In situ oligonucleotide synthesis using PGA (photogenerated acid) coupled with conventional DMT chemistry means high probe quality, tight process control, and complete content flexibility.
20 GPL9916 Illumina Genome Analyzer II (Physcomitrella patens) 0 2010-01-14 Physcomitrella patens
Physcomitrella patens		 HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Physcomitrella patens),
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