Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(67)

Plants
(49)

Viruses
(0)

Phages
(0)

Unclassified
(8)

All
(275)

SAGE NlaIII
(1)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(1)

Other
(0)

All
(49)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL4656	Arabidopsis whole genome tiling array ver1.0	194,017	Yale University	2006-12-12	NASA	Arabidopsis thaliana	Tiling Array	in situ oligonucleotide, Arabidopsis whole genome tiling array ver1.0, Oligo nucleotides 60mer in length are designed to represent single strand of the nonrepetitive DNA of the arabidopsis genome. The probes were selected from the Jan 22, 2004 TIGR release ver5.0 Arabdiopsis genome data
2	GPL4567	UHN Yeast 6.4kv6	6,143	Weizmann Institute of Science	2006-11-16	University Health Network Clinical Genomics Centre Microarray Centre	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, UHN Yeast 6.4kv6, Grid rows-12; Grid columns-4; Rows-20; Columns-20; Grid to grid distance-4500um; Spot to spot distance-200um; Spot size-100um.
3	GPL4655	High density Euphorbia esula and Manihot esculenta array	25,392	US Dept. Agriculture	2006-12-11	Keck Center University of IL Urbana	Manihot esculenta,Euphorbia esula	cDNA Array	spotted DNA/cDNA, High density Euphorbia esula and Manihot esculenta array, ~19000 unigene set from leafy spurge EST database supplemented with ~4000 cassava clones that had no obvious homology with any leafy spurge clone.
4	GPL4416	NimbleGen Saccharomyces cerevisiae oligonucleotide photolithographic maskless array	6,333	University of Wisconsin-Madison	2006-10-11	NimbleGen	Saccharomyces cerevisiae	Oligo Array	in situ oligonucleotide, NimbleGen Saccharomyces cerevisiae oligonucleotide photolithographic maskless array,
5	GPL4563	UW-Madison Saccharomyces cerevisiae tiling array_24mer oligos	190,062	University of Wisconsin - Madison	2006-11-15	Nimblegen Systems, Inc.	Saccharomyces cerevisiae	Tiling Array	in situ oligonucleotide, UW-Madison Saccharomyces cerevisiae tiling array_24mer oligos, ChIP-chip whole-genome tiling design. 24mer oligonucleotides.
6	GPL4413	Cryphonectria parasitica 4K spotted cDNA array	3,940	University of Maryland Biotechnology Institute	2006-10-11	Center for Biosystems Research, University of Maryland Biotechnology Institute	Cryphonectria parasitica	cDNA Array	spotted DNA/cDNA, Cryphonectria parasitica 4K spotted cDNA array,
7	GPL4635	QArray Oligo OL19kA Prints 0301-0307	19,200	University of Illinois	2006-12-05	Vodkin laboratory, University of Illinois	Glycine max	Oligo Array	spotted oligonucleotide, QArray Oligo OL19kA Prints 0301-0307,
8	GPL4462	Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4	13,056	University of Gothenburg	2006-10-18	UHN Microarray Center	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Saccharomyces cerevisiae 6.4K array (Y6.4K), version 4,
9	GPL4523	Judelson/Syngenta_Phytophthora infestans_15645_V.1	15,917	University of California	2006-11-05	Affymetrix	Phytophthora infestans	GeneChip	in situ oligonucleotide, Judelson/Syngenta_Phytophthora infestans_15645_V.1, The GeneChip is not available commercially.
10	GPL4570	Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv305.02.Z)	31,200	University of Arizona	2006-11-17	The Galbraith Laboratory, University of Arizona	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray version 3.0 (ATv305.02.Z),
11	GPL4650	Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 3.1.2.Y and AtOligio 3.2.2.Y)	29,952	University of Arizona	2006-12-07	The Galbraith Laboratory, University of Arizona	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 3.1.2.Y and AtOligio 3.2.2.Y), This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The Arabidopsis V1.0 AROS is designed from UniGene Build At. #4 (www.operon.com). This set comprises 26,000 oligonucleotides. Additional elements are printed as controls. This platform represents slides AtOligo 3.1.2.1-AtOligo 3.1.2.100 and AtOligo 3.2.2.1-AtOligo 3.2.2.100 (http://www.ag.arizona.edu/microarray).
12	GPL4648	Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.6.2.Y)	28,800	University of Arizona	2006-12-07	The Galbraith Laboratory, University of Arizona	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.6.2.Y), This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The Arabidopsis V1.0 AROS is designed from UniGene Build At. #4 (www.operon.com). This set comprises 26,000 oligonucleotides. Additional elements are printed as controls. This platform represents slides AtOligo 2.6.2.1-AtOligo 2.6.2.100 (http://www.ag.arizona.edu/microarray).
13	GPL4649	Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.9.2.Y)	28,800	University of Arizona	2006-12-07	The Galbraith Laboratory, University of Arizona	Arabidopsis thaliana	Oligo Array	spotted oligonucleotide, Galbraith Laboratory Operon Long Oligonucleotide Microarray Version 1.0 (AtOligo 2.9.2.Y), This oligonucleotide array is produced from the Operon Version 1.0 Array-Ready Oligo set (AROS). The Arabidopsis V1.0 AROS is designed from UniGene Build At. #4 (www.operon.com). This set comprises 26,000 oligonucleotides. Additional elements are printed as controls. This platform represents slides AtOligo 2.9.2.1-AtOligo 2.9.2.100 (http://www.ag.arizona.edu/microarray).
14	GPL4574	Conway Institute Candida parapsilosis 3851 v1.0	3,851	University Colege Dublin Conway Institute	2006-11-20	University College Dublin, Conway Institute	Candida parapsilosis	Oligo Array	spotted oligonucleotide, Conway Institute Candida parapsilosis 3851 v1.0,
15	GPL4565	Valencia yeast v4	6,144	Universitat de Valencia	2006-11-16	Seccion de Chips de DNA-SCSIE (University of Valencia)	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Valencia yeast v4, Nylon macroarray (7 x 11 cm) with 6019 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5568 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases).
16	GPL4566	Valencia yeast v5	6,144	Universitat de Valencia	2006-11-16	Seccion de Chips de DNA-SCSIE (University of Valencia)	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Valencia yeast v5, Nylon macroarray (7 x 11 cm) with 6019 single spotted yeast ORF probes. Probes are PCR fragments comprising the whole ORF (5568 cases) or a 1000 bp-fragment from the ORF 3' end (451 cases).
17	GPL4516	USP Blastocladiella emersonii 4.6 K Blasto3773 v2	4,608	Universidade de SÃƒÂ£o Paulo	2006-11-01	Universidade de Sao Paulo-Instituto de Quimica	Blastocladiella emersonii	cDNA Array	spotted DNA/cDNA, USP Blastocladiella emersonii 4.6 K Blasto3773 v2,
18	GPL4414	Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based)_for Buck MJ et al.	15,397	Univeristy of North Carolina at Chapel Hill	2006-10-11	Lieb Lab at UNC-CH	Saccharomyces cerevisiae	cDNA Array	spotted DNA/cDNA, Lieb Lab at UNC-CH_Yeast Whole-genome Array (PCR-based)_for Buck MJ et al., Whole-genome microarrays with PCR-amplified products represent ORFs, intergenic regions, and other noncoding regions (rDNA, tRNA, transposons, transposon long terminal repeats, telomeres, centromeres, and introns). Generally, each ORF was represented from start codon to stop codon. The intergenic regions consisted of the DNA between annotated ORFs divided such that PCR products were not longer than 1.5 kb, with a few exceptions. The noncoding regions conform to boundaries as annotated by the Saccharomyces Genome Database (SGD) as of the year 2000. Mitochondrial segments did not necessarily conform to annotated functional boundaries. This platform covers several print runs, in which print plates were arranged in different orders.
19	GPL4522	ORFs of Cryptococcus neoformans var. grubii (serotype A, H99)	6,849	UC San Francisco	2006-11-05	UC San Francisco	Cryptococcus neoformans var. grubii	Oligo Array	spotted oligonucleotide, ORFs of Cryptococcus neoformans var. grubii (serotype A, H99),
20	GPL4399	3D-Gene Yeast Oligo chip S.cerevisiae 6k	5,802	TORAY Industries, Inc.	2006-10-08	TORAY Industries, Inc.	Saccharomyces cerevisiae	Oligo Array	spotted oligonucleotide, 3D-Gene Yeast Oligo chip S.cerevisiae 6k, Ultra-sensitive DNA chip for S.cerevisiae genome wide gene expression analysis

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