Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(365)		   Primates
(4)		   Rodents
(305)		   Mammals
(19)		   Vertebrates
(21)		   Invertebrates
(59)		   Plants
(125)		   Bacteria
(66)		   Viruses
(3)		   Phages
(0)		   Unclassified
(11)		   All
(979)		  
  SAGE NlaIII
(3)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(39)		   Tiling Array
(13)		   cDNA Array
(26)		   Oligo Array
(32)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(9)		   Other
(1)		   All
(125)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 zip9_target_genes-Functional Characterization of AtbZIP9 (GSE11140) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.2 (GPL4346) INRA 2008-04-11 Arabidopsis thaliana
Arabidopsis thaliana		 455,688
(25,316 x 18) 		18 by_platform
by_series
2 Wind-responsive changes in poplar leaves of different developmental stages (GSE11026) [cDNA Array] PICME Poplar 28K 4_1/4_3 (GPL6036) Austrian Research Centers GmbH 2008-04-02 Populus nigra
Populus nigra		 663,552
(27,648 x 24) 		24 by_platform
by_series
3 Transcriptomic profiling of five industrial wine yeast strains at three time points during allcoholic fermentation (GSE11651) [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) University of Stellenbosch 2008-06-03 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 469,904
(10,928 x 43) 		43 by_platform
by_series
4 Transcriptome data - Respiratory S. cerevisiae Strain Phenotype is Glucose Insensitive and vital TFs are Hap4 Cat8 Mig1 (GSE11799) [cDNA Array] Wistar Yeast YA04 array (GPL4423) Aston university 2008-06-16 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 230,400
(9,600 x 24) 		24 by_platform
by_series
5 Transcriptome analysis of transgenics overexpressing SIBA(At3g56710) and SA treated plants. (GSE11177) [Oligo Array] Agilent-013324 Arabidopsis 2 Oligo Microarray (V2) G4136B (Feature Number version) (GPL2880) Research Institute for Biological Sciences 2008-04-15 Arabidopsis thaliana
Arabidopsis thaliana		 135,450
(22,575 x 6) 		6 by_platform
by_series
6 Transcriptome analysis of potato tubers: Effects of different agricultural practices (GSE11875) [cDNA Array] Food Safety Potato cDNA Microarray 1.0 (GPL6993) RIKILT, institute of food safety 2008-06-24 Solanum tuberosum
Solanum tuberosum		 192,288
(4,006 x 48) 		48 by_platform
by_series
7 Transcriptome analysis of fry2 mutants-Transcriptome analysis of fry2 mutants (GSE11174) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.2 (GPL4346) INRA 2008-04-15 Arabidopsis thaliana
Arabidopsis thaliana		 202,528
(25,316 x 8) 		8 by_platform
by_series
8 Transcriptome analyses of ragged seedling2 shoot apical meristem (SAM) vs non-mutant SAM (GSE11325) [cDNA Array] SAM1.1a (GPL3333) Cornell University 2008-05-02 Zea mays
Zea mays		 345,600
(19,200 x 18) 		18 by_platform
by_series
9 Transcriptome analyses of ragged seedling2 shoot apical meristem (SAM) vs non-mutant SAM (GSE11325) [cDNA Array] SAM3.0 (GPL3538) Cornell University 2008-05-02 Zea mays
Zea mays		 288,000
(16,000 x 18) 		18 by_platform
by_series
10 Transcriptional responses of Saccharomyces cerevisiae to carbon and nitrogen deprivation (GSE11754) [Oligo Array] Agilent-013384 Yeast Oligo Microarray (V2) G4140B (Feature Number version) (GPL2883) Princeton University 2008-06-10 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 129,684
(10,807 x 12) 		12 by_platform
by_series
11 Transcriptional Response of Candida albicans Cells Following Phagocytosis by Mouse Macrophages (GSE11399) [Oligo Array] BRI-NRC C. albicans expression microarray (GPL6822) National Research Council of Canada 2008-05-09 Candida albicans
Candida albicans		 159,696
(6,654 x 24) 		24 by_platform
by_series
12 Transcriptional profiling of Zea mays 10 DAP(days after pollination) kernels : water stress vs well-watered control (GSE11568) [Oligo Array] DSBB Maize 1k v.1.0 (GPL6906) Universita' degli studi di Milano 2008-05-27 Zea mays
Zea mays		 32,000
(2,000 x 16) 		16 by_platform
by_series
13 Transcriptional profiling of Rapamycin treatment in yeast cells lacking the Ptc1 protein phosphatase. (GSE11530) [cDNA Array] Yeast_ALL DNA chip (GPL4069) Universitat Autonoma de Barcelona 2008-05-21 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 24,892
(6,223 x 4) 		4 by_platform
by_series
14 Transcriptional profiling of Ascochyta blight resistance in Lentil (GSE11374) [cDNA Array] PulseChip 1 (GPL3649) University of melbourne 2008-05-07 Lens culinaris subsp. culinaris
Lens culinaris subsp. culinaris		 7,680
(768 x 10) 		10 by_platform
by_series
15 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants (GSE11558) [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) Max Planck Institute of Molecular Plant Physiology 2008-05-26 Arabidopsis thaliana
Arabidopsis thaliana		 638,680
(22,810 x 28) 		28 by_platform
by_series
16 Tomato root culture and Al treatment (GSE11816) [cDNA Array] CGEP TOM1 Tomato 13.4k cDNA microarray (GPL5775) Tennessee State University 2008-06-17 Solanum lycopersicum
Solanum lycopersicum		 80,640
(13,440 x 6) 		6 by_platform
by_series
17 time course uranyl nitrate response-Transcriptomic analysis of uranyl response in Arabidopsis thaliana (GSE11797) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.2 (GPL4346) INRA 2008-06-16 Arabidopsis thaliana
Arabidopsis thaliana		 1,012,640
(25,316 x 40) 		40 by_platform
by_series
18 TheRole of Rad23/Rad4 protein complex in transcription and DNA repair in yeast (GSE11871) [GeneChip] [YG_S98] Affymetrix Yeast Genome S98 Array (GPL90) University of Cardiff 2008-06-24 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 112,020
(9,335 x 12) 		12 by_platform
by_series
19 The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing (GSE11209) [HT Sequencing] Yale-Illumina-Yeast-RNA-Seq (GPL6750) Yale University 2008-04-17 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 1
(0 x 1) 		1 by_platform
by_series
20 The role of the central region of Ada2 in gene regulation (GSE11377) [Oligo Array] Agilent-014810 Yeast Whole Genome ChIP-on-Chip Microarray 4x44K (G4493A) (GPL4131) University of Western Ontario 2008-05-07 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 135,660
(45,220 x 3) 		3 by_platform
by_series
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