Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,432)
  Primates
(665)
  Rodents
(7,826)
  Mammals
(399)
  Vertebrates
(731)
  Invertebrates
(1,567)
  Plants
(3,435)
  Bacteria
(998)
  Viruses
(14)
  Phages
(0)
  Unclassified
(76)
  All
(33,163)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(806)
  Tiling Array
(260)
  cDNA Array
(1,292)
  Oligo Array
(981)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(90)
  Other
(0)
  All
(3,435)
 
  brain
(5)
  blood
(8)
  connective
(27)
  reproductive
(1)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(3)
  embryo
(0)
  adult aerial structure
(345)
  young aerial structure
(635)
  root
(100)
  meristem/growing tissue
(127)
  flower/sexual organ
(107)
  seed/fruit/grain
(251)
  pooled
(157)
  unclassified
(1,669)
  all
(3,435)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM402423 Wild type 4,453,247 UCLA 2009-05-12 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana
leaf leaves
2 GSM402424 atxr5/atxr6 double mutant 4,428,453 UCLA 2009-05-12 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana
leaf leaves
3 GSM399515 Brassica napus 2 replicate 4 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
4 GSM399516 Brassica oleracea replicate 1 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica oleracea
Brassica oleracea
leaf Brassica oleracea first true leaf
5 GSM399517 Brassica napus 4 replicate 3 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
6 GSM399518 Brassica napus 2 replicate 1 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
7 GSM399519 Brassica rapa replicate 1 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica rapa
Brassica rapa
leaf Brassica rapa first true leaf
8 GSM399520 Brassica napus 2 replicate 2 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
9 GSM399521 Brassica rapa replicate 4 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica rapa
Brassica rapa
leaf Brassica rapa first true leaf
10 GSM399522 Brassica oleracea replicate 3 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica oleracea
Brassica oleracea
leaf Brassica oleracea first true leaf
11 GSM399523 Brassica rapa replicate 2 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica rapa
Brassica rapa
leaf Brassica rapa first true leaf
12 GSM399524 Brassica napus 2 replicate 3 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
13 GSM399525 Brassica napus 4 replicate 4 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
14 GSM399526 Brassica rapa replicate 3 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica rapa
Brassica rapa
leaf Brassica rapa first true leaf
15 GSM399527 Brassica napus 4 replicate 1 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
16 GSM399528 Brassica oleracea replicate 4 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica oleracea
Brassica oleracea
leaf Brassica oleracea first true leaf
17 GSM399529 Brassica napus 4 replicate 2 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica napus
Brassica napus
leaf Brassica napus first true leaf
18 GSM399530 Brassica oleracea replicate 2 105,072 John Innes Centre 2009-04-30 [Oligo Array] Agilent Custom Brassica 60-mer two-color microarray (GPL8513) RNA Brassica oleracea
Brassica oleracea
leaf Brassica oleracea first true leaf
19 GSM412647 wildtype_mock-inoculated_rep1 61,413 Natural Resources Canada 2009-06-03 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
leaf wildtype leaf discs, mock-inoculated
20 GSM412648 wildtype_mock-inoculated_rep2 61,413 Natural Resources Canada 2009-06-03 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
leaf wildtype leaf discs, mock-inoculated
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