Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,698)		   Primates
(0)		   Rodents
(303)		   Mammals
(0)		   Vertebrates
(0)		   Invertebrates
(3)		   Plants
(555)		   Bacteria
(29)		   Viruses
(0)		   Phages
(0)		   Unclassified
(0)		   All
(3,664)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(278)		   Tiling Array
(0)		   cDNA Array
(15)		   Oligo Array
(221)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(41)		   Other
(0)		   All
(555)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(50)		   unclassified
(256)		   all
(555)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM442935 Shoot_+Pi_sRNASeq 1,264,620 Academia Sinica 2009-08-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot
2 GSM442934 Shoot_-Pi_sRNASeq 1,257,082 Academia Sinica 2009-08-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 meristem/growing tissue shoot
3 GSM442933 Root_+Pi_sRNASeq 701,277 Academia Sinica 2009-08-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 root root
4 GSM442932 Root_-Pi_sRNASeq 611,204 Academia Sinica 2009-08-20 [HT Sequencing] Illumina Genome Analyzer (Arabidopsis thaliana) (GPL9062) SRA Arabidopsis thaliana
Arabidopsis thaliana		 root root
5 GSM874320 pha-degradome 479,333 Academia Sinica 2012-02-13 [HT Sequencing] Illumina Genome Analyzer (Phalaenopsis aphrodite subsp. formosana) (GPL13240) SRA Phalaenopsis aphrodite subsp. formosana
Phalaenopsis aphrodite subsp. formosana		 pooled leaf, stalk, flower bud, flower, tetraploid WT
6 GSM267998 Yellow leaves in F9Y RILs from parents lines 57,381 NCHU 2008-02-26 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa		 leaf Oryza sativa leaf from recombinant inbreed line , mutant, vegetative stage
7 GSM267999 Green leaves in F9G RILs from parents lines 57,381 NCHU 2008-02-26 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa
Oryza sativa		 leaf Oryza sativa leaf from recombinant inbreed line, normal green
8 GSM677756 Rice seedlings roots_juglone Replicate 1 42,475 National Cheng Kung University 2011-02-18 [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) RNA Oryza sativa
Oryza sativa		 pooled Roots of rice seedlings were exposed to 10mM juglone Rice seedlings roots were exposed to water
9 GSM677757 Rice seedlings roots_juglone Replicate 2 42,475 National Cheng Kung University 2011-02-18 [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) RNA Oryza sativa
Oryza sativa		 pooled Roots of rice seedlings were exposed to 10mM juglone Rice seedlings roots were exposed to water
10 GSM677758 Rice seedlings roots_juglone Replicate 3 42,475 National Cheng Kung University 2011-02-18 [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) RNA Oryza sativa
Oryza sativa		 pooled Roots of rice seedlings were exposed to 10mM juglone Rice seedlings roots were exposed to water
11 GSM825525 Rice seedlings roots_As(V) Replicate 1 42,475 National Cheng Kung University 2011-11-01 [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) RNA Oryza sativa
Oryza sativa		 pooled Roots of rice seedlings were exposed to 25 μM As(V) Rice seedlings roots were exposed to water
12 GSM825526 Rice seedlings roots_As(V) Replicate 2 42,475 National Cheng Kung University 2011-11-01 [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) RNA Oryza sativa
Oryza sativa		 pooled Roots of rice seedlings were exposed to 25 μM As(V) Rice seedlings roots were exposed to water
13 GSM825527 Rice seedlings roots_As(V) Replicate 3 42,475 National Cheng Kung University 2011-11-01 [Oligo Array] Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) (GPL8852) RNA Oryza sativa
Oryza sativa		 pooled Roots of rice seedlings were exposed to 25 μM As(V) Rice seedlings roots were exposed to water
14 GSM715748 Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Replicate 1 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
15 GSM715749 Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Replicate 2 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
16 GSM715750 Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Replicate 3 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
17 GSM715751 Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Replicate 4 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 0.5h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
18 GSM715752 Roots of 1h Root-Flooded Arabidopsis (Columbia) Replicate 1 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 1h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
19 GSM715753 Roots of 1h Root-Flooded Arabidopsis (Columbia) Replicate 2 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 1h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
20 GSM715754 Roots of 1h Root-Flooded Arabidopsis (Columbia) Replicate 3 29,132 Academia Sinica 2011-04-27 [Oligo Array] IMB Arabidopsis thaliana 30K operon oligo array (GPL7480) RNA Arabidopsis thaliana
Arabidopsis thaliana		 root Roots of 1h Root-Flooded Arabidopsis (Columbia) Roots of Arabidopsis (Columbia) without flooding treatment
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