Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(88)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(298)		   GeneChip
(27,654)		   Tiling Array
(5,201)		   cDNA Array
(24,041)		   Oligo Array
(30,982)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(4,835)		   Other
(117)		   All
(93,301)		  
  brain
(306)		   blood
(1,156)		   connective
(201)		   reproductive
(456)		   muscular
(16)		   digestive
(44)		   liver
(0)		   lung
(76)		   urinary
(43)		   endo/exo-crine
(101)		   embryo
(135)		   adult aerial structure
(12,240)		   young aerial structure
(8,419)		   root
(4,862)		   meristem/growing tissue
(2,307)		   flower/sexual organ
(3,159)		   seed/fruit/grain
(3,159)		   pooled
(6,762)		   unclassified
(49,859)		   all
(93,301)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1149315 Leaf-WildType-REP1 22,810 Instituto de Bioquímica Vegetal y Fotosíntesis 2013-05-28 [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) RNA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, wild type 14-days-old plants
2 GSM1149316 Leaf-WildType-REP2 22,810 Instituto de Bioquímica Vegetal y Fotosíntesis 2013-05-28 [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) RNA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, wild type 14-days-old plants
3 GSM1149317 Leaf-WildType-REP3 22,810 Instituto de Bioquímica Vegetal y Fotosíntesis 2013-05-28 [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) RNA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, wild type 14-days-old plants
4 GSM1149318 Leaf-cys-c1-REP1 22,810 Instituto de Bioquímica Vegetal y Fotosíntesis 2013-05-28 [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) RNA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, cysc-c1 mutant 14-days-old plants
5 GSM1149319 Leaf-cys-c1-REP2 22,810 Instituto de Bioquímica Vegetal y Fotosíntesis 2013-05-28 [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) RNA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, cysc-c1 mutant 14-days-old plants
6 GSM1149320 Leaf-cys-c1-REP3 22,810 Instituto de Bioquímica Vegetal y Fotosíntesis 2013-05-28 [GeneChip] [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array (GPL198) RNA Arabidopsis thaliana
Arabidopsis thaliana		 leaf leaf, cysc-c1 mutant 14-days-old plants
7 GSM1143563 WT_root_0.25_uM_Cd_4_days_biological_rep1 43,723 University of Warsaw 2013-05-16 [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum (GPL16330) RNA Nicotiana tabacum
Nicotiana tabacum		 root WT_root_0.25_uM_Cd_4_days_biological_rep1
8 GSM1143564 WT_root_0.25_uM_Cd_4_days_biological_rep2 43,723 University of Warsaw 2013-05-16 [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum (GPL16330) RNA Nicotiana tabacum
Nicotiana tabacum		 root WT_root_0.25_uM_Cd_4_days_biological_rep2
9 GSM1143565 WT_root_0.25_uM_Cd_4_days_biological_rep3 43,723 University of Warsaw 2013-05-16 [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum (GPL16330) RNA Nicotiana tabacum
Nicotiana tabacum		 root WT_root_0.25_uM_Cd_4_days_biological_rep3
10 GSM1143566 35S:AtHMA4_root_0.25_uM_Cd_4_days_biological_rep1 43,723 University of Warsaw 2013-05-16 [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum (GPL16330) RNA Nicotiana tabacum
Nicotiana tabacum		 root 35S:AtHMA4_root_0.25_uM_Cd_4_days_biological_rep1
11 GSM1143567 35S:AtHMA4_root_0.25_uM_Cd_4_days_biological_rep2 43,723 University of Warsaw 2013-05-16 [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum (GPL16330) RNA Nicotiana tabacum
Nicotiana tabacum		 root 35S:AtHMA4_root_0.25_uM_Cd_4_days_biological_rep2
12 GSM1143568 35S:AtHMA4_root_0.25_uM_Cd_4_days_biological_rep3 43,723 University of Warsaw 2013-05-16 [GeneChip] [ATCTOBa520488] Affymetrix Custom Array - Nicotiana tabacum (GPL16330) RNA Nicotiana tabacum
Nicotiana tabacum		 root 35S:AtHMA4_root_0.25_uM_Cd_4_days_biological_rep3
13 GSM1142603 Replete 1, day 3 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells grown in replete media, harvested on day 3 title:Replete 1, day 3 description:Gene expression in replete cultures in late exponential phase
14 GSM1142604 Replete 1, day 5 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells grown in replete media, harvested on day 5 title:Replete 1, day 5 description:Gene expression in replete cultures in stationary phase
15 GSM1142605 Replete 2, day 3 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells grown in replete media, harvested on day 3 title:Replete 2, day 3 description:Gene expression in replete cultures in late exponential phase
16 GSM1142606 Replete 2, day 5 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells grown in replete media, harvested on day 5 title:Replete 2, day 5 description:Gene expression in replete cultures in stationary phase
17 GSM1142607 Iron-limited 1, day 3 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells were grown in replete media, then washed and resuspended in iron-free media; cells were harvested on day 3 title:Iron-limited 1, day 3 description:Gene expression in iron-limited cultures in late exponential phase
18 GSM1142608 Iron-limited 1, day 5 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells were grown in replete media, then washed and resuspended in iron-free media; cells were harvested on day 5 title:Iron-limited 1, day 5 description:Gene expression in iron-limited cultures in stationary phase
19 GSM1142609 Iron-limited 2, day 3 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells were grown in replete media, then washed and resuspended in iron-free media; cells were harvested on day 3 title:Iron-limited 2, day 3 description:Gene expression in iron-limited cultures in late exponential phase
20 GSM1142610 Iron-limited 2, day 5 11,331 Rutgers University 2013-05-15 [Oligo Array] Agilent-020016 Thaps-BRTC (GPL17168) RNA Thalassiosira pseudonana
Thalassiosira pseudonana		 unclassified source_name:Cells were grown in replete media, then washed and resuspended in iron-free media; cells were harvested on day 5 title:Iron-limited 2, day 5 description:Gene expression in iron-limited cultures in stationary phase
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