Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,851)		   Primates
(60)		   Rodents
(2,590)		   Mammals
(41)		   Vertebrates
(39)		   Invertebrates
(59)		   Plants
(464)		   Bacteria
(78)		   Viruses
(0)		   Phages
(0)		   Unclassified
(120)		   All
(6,302)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(132)		   Tiling Array
(0)		   cDNA Array
(222)		   Oligo Array
(90)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(464)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(76)		   unclassified
(347)		   all
(464)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM37975 HSF1 wt replicate 1 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HSF1 wt cells grown at 39oC for 15 min title:HSF1 wt replicate 1 description:Total RNA isolated from HSF1 wt cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = HSF1 wt replicate 1
2 GSM37978 HSF1 wt replicate 2 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HSF1 wt cells grown at 39oC for 15 min title:HSF1 wt replicate 2 description:Total RNA isolated from HSF1 wt cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = HSF1 wt replicate 2
3 GSM37979 hsf1-R206S/F256S replicate 1 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:hsf1-R206S/F256S cells grown at 39oC for 15 min title:hsf1-R206S/F256S replicate 1 description:Total RNA isolated from hsf1-R206S/F256S cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = hsf1-rf replicate 1
4 GSM37980 hsf1-R206S/F256S replicate 2 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:hsf1-R206S/F256S cells grown at 39oC for 15 min title:hsf1-R206S/F256S replicate 2 description:Total RNA isolated from hsf1-R206S/F256S cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = hsf1-rf replicate 2
5 GSM37959 H2O2 treated 3.00 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 75 mM H2O2 for 3 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37728.
6 GSM37960 H2O2 treated 3.00 h sample- 2nd print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 75 mM H2O2 for 3 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37728.
7 GSM37963 H2O2 treated 9.00 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 75 mM H2O2 for 9 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37730.
8 GSM37964 H2O2 treated 9.00 h sample- 2nd print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 75 mM H2O2 for 9 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37730.
9 GSM37965 Menadione treated 0.50 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 30 min. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37731.
10 GSM37966 Menadione treated 0.50 h sample- 2nd print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 30 min. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37731.
11 GSM37967 Menadione treated 1.00 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 1 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37732.
12 GSM37968 Menadione treated 1.00 h sample- 2nd print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 1 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37732.
13 GSM37969 Menadione treated 3.00 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 3 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37733.
14 GSM37970 Menadione treated 3.00 h sample- 2nd print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 3 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37733.
15 GSM37971 Menadione treated 6.00 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 6 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37734.
16 GSM37972 Menadione treated 6.00 h sample- 2nd print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 6 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37734.
17 GSM37973 Menadione treated 9.00 h sample- 1st print of spots - primary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 9 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37735.
18 GSM37974 Menadione treated 9.00 h sample- 2nd print of spots - pimary experimental data. 4,352 University of Debrecen 2004-12-22 [cDNA Array] Emericella nidulans EST-based chip primary data (GPL1756) RNA Emericella nidulans
Emericella nidulans		 pooled Late exponential phase (18 h) Emericella nidulans mycelia were treated in minimal media with 0.8 mM menadione (sodium bisulfite addition compound) for 9 h. Processed data after LOESS-type block-by-block normalization are summarized on Platform GPL1752 in file Sample GSM37735.
19 GSM37981 wild type 4 hours exposure to congo red 1 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 1 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
20 GSM37982 wild type 4 hours exposure to congo red 2 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 2 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
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