Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(92)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(366)
  GeneChip
(31,260)
  Tiling Array
(5,692)
  cDNA Array
(24,724)
  Oligo Array
(35,607)
  Bead Array
(2,290)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(7,427)
  Other
(120)
  All
(107,706)
 
  brain
(324)
  blood
(1,302)
  connective
(232)
  reproductive
(482)
  muscular
(29)
  digestive
(52)
  liver
(0)
  lung
(77)
  urinary
(53)
  endo/exo-crine
(129)
  embryo
(177)
  adult aerial structure
(15,762)
  young aerial structure
(9,385)
  root
(5,765)
  meristem/growing tissue
(2,624)
  flower/sexual organ
(3,659)
  seed/fruit/grain
(3,775)
  pooled
(7,302)
  unclassified
(56,577)
  all
(107,706)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM161100 Tiling microarray for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 12 287,600 Yale University 2007-02-08 [Tiling Array] Tiling microarray for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 12 (GPL4816) RNA Oryza sativa
Oryza sativa
pooled Poly(A)+ RNA population from japonica Rice seedling root, seedling shoot, panicle, and suspension cultured cells
2 GSM161142 Tiling microarray OS16606 for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 2 389,287 Yale University 2007-02-08 [Tiling Array] Tiling microarray OS16606 for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 2 (GPL4822) RNA Oryza sativa
Oryza sativa
pooled Poly(A)+ RNA population from japonica Rice seedling root, seedling shoot, panicle, and suspension cultured cells
3 GSM161143 Tiling microarray OS16618 for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 12 389,287 Yale University 2007-02-08 [Tiling Array] Tiling microarray OS16618 for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 12 (GPL4823) RNA Oryza sativa
Oryza sativa
pooled Poly(A)+ RNA population from japonica Rice seedling root, seedling shoot, panicle, and suspension cultured cells
4 GSM161144 Tiling microarray OS16945 for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 7 389,287 Yale University 2007-02-08 [Tiling Array] Tiling microarray OS16945 for Oryza sativa japonica genome (version 2 pseudomolecules from TIGR) Chromosome 7 (GPL4825) RNA Oryza sativa
Oryza sativa
pooled Poly(A)+ RNA population from japonica Rice seedling root, seedling shoot, panicle, and suspension cultured cells
5 GSM617106 PH1_untreated_rep1 13,330 Martin-Luther-University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences 2010-11-03 [Oligo Array] 021301-MLU Fusarium graminearum 8x15K v1.0 (GPL11158) RNA Gibberella zeae
Gibberella zeae
unclassified source_name:PH1_complete medium_non-treated control title:PH1_untreated_rep1 description:Gene expression in untreated control culture
6 GSM617107 PH1_untreated_rep2 13,330 Martin-Luther-University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences 2010-11-03 [Oligo Array] 021301-MLU Fusarium graminearum 8x15K v1.0 (GPL11158) RNA Gibberella zeae
Gibberella zeae
unclassified source_name:PH1_complete medium_non-treated control title:PH1_untreated_rep2 description:Gene expression in untreated control culture
7 GSM617108 PH1_untreated_rep3 13,330 Martin-Luther-University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences 2010-11-03 [Oligo Array] 021301-MLU Fusarium graminearum 8x15K v1.0 (GPL11158) RNA Gibberella zeae
Gibberella zeae
unclassified source_name:PH1_complete medium_non-treated control title:PH1_untreated_rep3 description:Gene expression in untreated control culture
8 GSM617109 PH1_tebuconazole treated_rep1 13,330 Martin-Luther-University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences 2010-11-03 [Oligo Array] 021301-MLU Fusarium graminearum 8x15K v1.0 (GPL11158) RNA Gibberella zeae
Gibberella zeae
unclassified source_name:PH1_complete medium_5 mg/l tebuconazole_12h title:PH1_tebuconazole treated_rep1 description:Gene expression after 12 h - treatment with 5mg/l tebuconazole
9 GSM617110 PH1_tebuconazole treated_rep2 13,330 Martin-Luther-University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences 2010-11-03 [Oligo Array] 021301-MLU Fusarium graminearum 8x15K v1.0 (GPL11158) RNA Gibberella zeae
Gibberella zeae
unclassified source_name:PH1_complete medium_5 mg/l tebuconazole_12h title:PH1_tebuconazole treated_rep2 description:Gene expression after 12 h - treatment with 5mg/l tebuconazole
10 GSM617111 PH1_tebuconazole treated_rep3 13,330 Martin-Luther-University Halle-Wittenberg, Institute of Agricultural and Nutritional Sciences 2010-11-03 [Oligo Array] 021301-MLU Fusarium graminearum 8x15K v1.0 (GPL11158) RNA Gibberella zeae
Gibberella zeae
unclassified source_name:PH1_complete medium_5 mg/l tebuconazole_12h title:PH1_tebuconazole treated_rep3 description:Gene expression after 12 h - treatment with 5mg/l tebuconazole
11 GSM714359 S.cerevisiae and S.paradoxus at rich media (YPD), before Phenanthroline, Green dye, repeat #1 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), before Phenanthroline, Green dye, repeat #1
12 GSM714360 S.cerevisiae and S.paradoxus at rich media (YPD), 20min with Phenanthroline, Green dye, repeat #1 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), 20min with Phenanthroline, Green dye, repeat #1
13 GSM714361 S.cerevisiae and S.paradoxus at rich media (YPD), 40min with Phenanthroline, Green dye, repeat #1 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), 40min with Phenanthroline, Green dye, repeat #1
14 GSM714362 S.cerevisiae and S.paradoxus at rich media (YPD), 60min with Phenanthroline, Green dye, repeat #1 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), 60min with Phenanthroline, Green dye, repeat #1
15 GSM714363 S.cerevisiae and S.paradoxus at rich media (YPD), before Phenanthroline, Green dye, repeat #2 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), before Phenanthroline, Green dye, repeat #2
16 GSM714364 S.cerevisiae and S.paradoxus at rich media (YPD), 20min with Phenanthroline, Green dye, repeat #2 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), 20min with Phenanthroline, Green dye, repeat #2
17 GSM714365 S.cerevisiae and S.paradoxus at rich media (YPD), 40min with Phenanthroline, Green dye, repeat #2 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), 40min with Phenanthroline, Green dye, repeat #2
18 GSM714366 S.cerevisiae and S.paradoxus at rich media (YPD), 60min with Phenanthroline, Green dye, repeat #2 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae,Saccharomyces paradoxus
Saccharomyces cerevisiae,Saccharomyces paradoxus
unclassified source_name:S. cerevisiae (diploid BY4741 ho::kanMX4), S. paradoxus (diploid CBS432 ho::nat1) title:S.cerevisiae and S.paradoxus at rich media (YPD), 60min with Phenanthroline, Green dye, repeat #2
19 GSM714367 hybrid at rich media (YPD), before Phenanthroline, Red dye, repeat #1 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae x Saccharomyces paradoxus
Saccharomyces cerevisiae x Saccharomyces paradoxus
unclassified source_name:S. cerevisiae BY4741 X S. paradoxus CBS432 (ho::kanMX4/ho::nat1 MATa/MATα) title:hybrid at rich media (YPD), before Phenanthroline, Red dye, repeat #1
20 GSM714368 hybrid at rich media (YPD), 20min with Phenanthroline, Red dye, repeat #1 21,840 Weizmann Institute of Science 2011-04-25 [Oligo Array] 027169-Agilent Yeast Aarray for S.cerevisiae and S.paradoxus (4 X 44K) (GPL13449) RNA Saccharomyces cerevisiae x Saccharomyces paradoxus
Saccharomyces cerevisiae x Saccharomyces paradoxus
unclassified source_name:S. cerevisiae BY4741 X S. paradoxus CBS432 (ho::kanMX4/ho::nat1 MATa/MATα) title:hybrid at rich media (YPD), 20min with Phenanthroline, Red dye, repeat #1
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