Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(88)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(298)		   GeneChip
(27,371)		   Tiling Array
(5,043)		   cDNA Array
(23,783)		   Oligo Array
(30,226)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(4,443)		   Other
(117)		   All
(91,454)		  
  brain
(306)		   blood
(1,138)		   connective
(192)		   reproductive
(456)		   muscular
(16)		   digestive
(44)		   liver
(0)		   lung
(76)		   urinary
(43)		   endo/exo-crine
(101)		   embryo
(123)		   adult aerial structure
(12,032)		   young aerial structure
(8,350)		   root
(4,758)		   meristem/growing tissue
(2,248)		   flower/sexual organ
(3,045)		   seed/fruit/grain
(3,122)		   pooled
(6,585)		   unclassified
(48,819)		   all
(91,454)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM738733 hyl1-2-dcl1-20_flower_8week 28,114,835 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ flowers and flower buds, hyl1-2/dcl1-20
2 GSM738734 hyl1-2-dcl1-21_flower_8week 24,264,574 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ flowers and flower buds, hyl1-2/dcl1-21
3 GSM738732 hyl1-2_flower_8week 19,648,148 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ flowers and flower buds, hyl1-2
4 GSM738730 hyl1-2-dcl1-21_rosetteleaf_5week 19,060,497 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf rosette leaves, hyl1-2/dcl1-21
5 GSM434596 Rice degradome 15,454,006 Oklahoma State University 2009-07-29 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 young aerial structure seedlings
6 GSM738731 wild-type_flower_8week 13,160,378 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 other flower/sexual organ flowers and flower buds, wild-type
7 GSM738728 hyl1-2_rosetteleaf_5week 13,039,508 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf rosette leaves, hyl1-2
8 GSM856058 Col-0 RNA-seq 11,634,971 University of California, Los Angeles 2012-01-04 [HT Sequencing] Illumina HiSeq 2000 (Arabidopsis thaliana) (GPL13222) SRA Arabidopsis thaliana
Arabidopsis thaliana		 unclassified source_name:Col-0 RNA-seq title:Col-0 RNA-seq description:mRNA-seq on poly-A purified RNA
9 GSM738727 wild-type_rosetteleaf_5week 10,403,895 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf rosette leaves, wild-type
10 GSM738729 hyl1-2-dcl1-20_rosetteleaf_5week 9,121,463 Pennsylvania State University 2011-06-07 [HT Sequencing] AB SOLiD 4 System (Arabidopsis thaliana) (GPL14599) SRA Arabidopsis thaliana
Arabidopsis thaliana		 leaf rosette leaves, hyl1-2/dcl1-20
11 GSM769293 Medicago truncatula Flower_PARE 8,136,241 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345) SRA Medicago truncatula
Medicago truncatula		 other flower/sexual organ Flower
12 GSM343498 Yeast Exponential phase glucose GCC library without MspI site 7,431,142 Massey University 2008-11-18 [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) SRA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Exponential yeast cells title:Yeast Exponential phase glucose GCC library without MspI site description:none
13 GSM618278 RNA-seq leaf 7,402,434 Yellow Sea Fisheries Research Institute (YSFRI), Chinese Academy of Fishery Sciences, Qingdao, 266071, China 2010-11-05 [HT Sequencing] Illumina Genome Analyzer (Carthamus tinctorius) (GPL11168) SRA Carthamus tinctorius
Carthamus tinctorius		 leaf leaf
14 GSM618276 RNA-seq seed 6,953,940 Yellow Sea Fisheries Research Institute (YSFRI), Chinese Academy of Fishery Sciences, Qingdao, 266071, China 2010-11-05 [HT Sequencing] Illumina Genome Analyzer (Carthamus tinctorius) (GPL11168) SRA Carthamus tinctorius
Carthamus tinctorius		 other seed/fruit/grain seed
15 GSM476257 Oryza sativa L. ssp. indica Degradome 6,630,999 Institute of Genetics and Developmental Biology 2009-11-30 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa Indica Group) (GPL9726) SRA Oryza sativa Indica Group
Oryza sativa Indica Group		 other flower/sexual organ young inflorescences (4~6cm)
16 GSM618277 RNA-seq petal 6,606,127 Yellow Sea Fisheries Research Institute (YSFRI), Chinese Academy of Fishery Sciences, Qingdao, 266071, China 2010-11-05 [HT Sequencing] Illumina Genome Analyzer (Carthamus tinctorius) (GPL11168) SRA Carthamus tinctorius
Carthamus tinctorius		 other flower/sexual organ petal
17 GSM509288 rdp1delta_siRNA 5,565,042 University of Edinburgh 2010-02-15 [HT Sequencing] Illumina Genome Analyzer II (Schizosaccharomyces pombe) (GPL9453) SRA Schizosaccharomyces pombe
Schizosaccharomyces pombe		 unclassified source_name:rdp1delta_siRNA title:rdp1delta_siRNA
18 GSM648139 Oryza sativa L. ssp. japonica zhonghua11_HT panicle sRNA 5,530,539 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
19 GSM648141 Oryza sativa L. ssp. japonica zhonghua11_LT panicle sRNA 5,321,168 Institute of Genetics and Developmental Biology 2011-01-03 [HT Sequencing] Illumina Genome Analyzer (Oryza sativa) (GPL9147) SRA Oryza sativa
Oryza sativa		 other flower/sexual organ young panicles (4cm)
20 GSM346118 mRNA-rich-2 5,003,046 UCSF 2008-11-26 [HT Sequencing] Illumina Genome Analyzer (Saccharomyces cerevisiae) (GPL9134) SRA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 bone Small RNA sequencing by polyadenylation and circularization: RNA fragments were dephosphorylated, purified by filtration followed by gel purification for ~30 bp fragments, tailed with poly-A polymerase, reverse transcribed with anchored oligo-dT primer, cDNA was circularized Footprints: sucrose density gradient; mRNA: polyA
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