Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,853)
  Primates
(64)
  Rodents
(764)
  Mammals
(0)
  Vertebrates
(22)
  Invertebrates
(142)
  Plants
(204)
  Bacteria
(539)
  Viruses
(0)
  Phages
(0)
  Unclassified
(9)
  All
(5,597)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(80)
  Tiling Array
(21)
  cDNA Array
(0)
  Oligo Array
(103)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(204)
 
  brain
(0)
  blood
(0)
  connective
(0)
  reproductive
(0)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(18)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(0)
  unclassified
(186)
  all
(204)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM564474 Yeast_20.9%oxygen_transient8h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 8h. title:Yeast_20.9%oxygen_transient8h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 8 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
2 GSM564467 Yeast_20.9%oxygen_transient8h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 8h. title:Yeast_20.9%oxygen_transient8h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 8 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
3 GSM564476 Yeast_20.9%oxygen_transient79h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 79h. title:Yeast_20.9%oxygen_transient79h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 79 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
4 GSM564469 Yeast_20.9%oxygen_transient79h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 79h. title:Yeast_20.9%oxygen_transient79h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 79 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
5 GSM564473 Yeast_20.9%oxygen_transient3h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 3h. title:Yeast_20.9%oxygen_transient3h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 3 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
6 GSM564466 Yeast_20.9%oxygen_transient3h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 3h. title:Yeast_20.9%oxygen_transient3h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 3 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
7 GSM564475 Yeast_20.9%oxygen_transient24h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 24h. title:Yeast_20.9%oxygen_transient24h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 24 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
8 GSM564468 Yeast_20.9%oxygen_transient24h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 24h. title:Yeast_20.9%oxygen_transient24h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 24 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
9 GSM564472 Yeast_20.9%oxygen_transient1h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 1h. title:Yeast_20.9%oxygen_transient1h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 1 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
10 GSM564465 Yeast_20.9%oxygen_transient1h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 1h. title:Yeast_20.9%oxygen_transient1h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 1 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
11 GSM564470 Yeast_20.9%oxygen_transient0h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 0h. title:Yeast_20.9%oxygen_transient0h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 0 hours sample (steady state) from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
12 GSM564463 Yeast_20.9%oxygen_transient0h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 0h. title:Yeast_20.9%oxygen_transient0h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 0 hours sample (steady state) from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
13 GSM564471 Yeast_20.9%oxygen_transient0.2h_rep2 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 0.2h. title:Yeast_20.9%oxygen_transient0.2h_rep2 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 0.2 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
14 GSM564464 Yeast_20.9%oxygen_transient0.2h_rep1 5,716 VTT Technical Research Centre of Finland 2010-07-08 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, transient from 20.9% to 0% oxygen, timepoint 0.2h. title:Yeast_20.9%oxygen_transient0.2h_rep1 description:Study description: S. cerevisiae CEN.PK113-1A (MATa, URA3, HIS3, LEU2, TRP1, MAL2-8c, SUC2) grown in Verduyn mimimal medium with 10 g/L glucose as carbon source, and supplemented with 10 mg/L ergosterol and 420 mg/L Tween 80, in Biostat CT bioreactor. Sample from steady state with 1% oxygen, transient timepoint 0h This sample: This sample: 0.2 hours sample from a time-series experiment. Glucose-limited chemostat, starting oxygen provision 20.9 %. After steady state was achieved, oxygen feed was switched to nitrogen for anaerobic conditions.
15 GSM312548 Yeast_20.9%oxygen_steadystate_rep4 5,716 VTT Technical Research Centre of Finland 2008-08-14 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, 20.9 % oxygen, steady state. title:Yeast_20.9%oxygen_steadystate_rep4 description:Steady state sample of glucose-limited chemostat with 20.9 % oxygen provision in a series of chemostats with oxygen provision 0,0.5,1,2.8 and 20.9 % oxygen provision. Replicate 4/4.
16 GSM312547 Yeast_20.9%oxygen_steadystate_rep3 5,716 VTT Technical Research Centre of Finland 2008-08-14 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, 20.9 % oxygen, steady state. title:Yeast_20.9%oxygen_steadystate_rep3 description:Steady state sample of glucose-limited chemostat with 20.9 % oxygen provision in a series of chemostats with oxygen provision 0,0.5,1,2.8 and 20.9 % oxygen provision. Replicate 3/4.
17 GSM312534 Yeast_20.9%oxygen_steadystate_rep2 5,716 VTT Technical Research Centre of Finland 2008-08-14 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, 20.9 % oxygen, steady state. title:Yeast_20.9%oxygen_steadystate_rep2 description:Steady state sample of glucose-limited chemostat with 20.9 % oxygen provision in a series of chemostats with oxygen provision 0,0.5,1,2.8 and 20.9 % oxygen provision. Replicate 2/4.
18 GSM312533 Yeast_20.9%oxygen_steadystate_rep1 5,716 VTT Technical Research Centre of Finland 2008-08-14 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, 20.9 % oxygen, steady state. title:Yeast_20.9%oxygen_steadystate_rep1 description:Steady state sample of glucose-limited chemostat with 20.9 % oxygen provision in a series of chemostats with oxygen provision 0,0.5,1,2.8 and 20.9 % oxygen provision. Replicate 1/4.
19 GSM312532 Yeast_2.8%oxygen_steadystate_rep4 5,716 VTT Technical Research Centre of Finland 2008-08-14 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, 2.8 % oxygen, steady state. title:Yeast_2.8%oxygen_steadystate_rep4 description:Steady state sample of glucose-limited chemostat with 2.8 % oxygen provision in a series of chemostats with oxygen provision 0,0.5,1,2.8 and 20.9 % oxygen provision. Replicate 4/4.
20 GSM312531 Yeast_2.8%oxygen_steadystate_rep3 5,716 VTT Technical Research Centre of Finland 2008-08-14 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae
unclassified source_name:Saccharomyces cerevisiae cells, glucose-limited chemostat, 2.8 % oxygen, steady state. title:Yeast_2.8%oxygen_steadystate_rep3 description:Steady state sample of glucose-limited chemostat with 2.8 % oxygen provision in a series of chemostats with oxygen provision 0,0.5,1,2.8 and 20.9 % oxygen provision. Replicate 3/4.
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