Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(10,037)		   Primates
(106)		   Rodents
(1,894)		   Mammals
(692)		   Vertebrates
(418)		   Invertebrates
(220)		   Plants
(1,800)		   Bacteria
(367)		   Viruses
(0)		   Phages
(0)		   Unclassified
(28)		   All
(15,562)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(3)		   GeneChip
(313)		   Tiling Array
(41)		   cDNA Array
(837)		   Oligo Array
(577)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(29)		   Other
(0)		   All
(1,800)		  
  brain
(0)		   blood
(13)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(90)		   young aerial structure
(185)		   root
(39)		   meristem/growing tissue
(50)		   flower/sexual organ
(5)		   seed/fruit/grain
(11)		   pooled
(105)		   unclassified
(1,302)		   all
(1,800)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM469900 ypr045c rep-3 10,928 CABIMER-CSIC 2009-11-12 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae, ypr045c deletion mutant title:ypr045c rep-3 description:no additional information
2 GSM469899 ypr045c rep-2 10,928 CABIMER-CSIC 2009-11-12 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae, ypr045c deletion mutant title:ypr045c rep-2 description:no additional information
3 GSM469898 ypr045c rep-1 10,928 CABIMER-CSIC 2009-11-12 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae, ypr045c deletion mutant title:ypr045c rep-1 description:no additional information
4 GSM37996 yellow experiment 4 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 4 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
5 GSM37995 yellow experiment 3 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 3 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
6 GSM37994 yellow experiment 2 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 2 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
7 GSM37993 yellow experiment 1 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 1 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
8 GSM290542 Yeast_wt+Rapamycin_Cy5 vs wt-Rapamycin_Cy3 6,223 Universitat Autonoma de Barcelona 2008-05-21 [cDNA Array] Yeast_ALL DNA chip (GPL4069) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:wild type yeast strain in log phase culture, Rapamycin-treated cells wild type yeast strain in log phase culture, Mock-treated cells title:Yeast_wt+Rapamycin_Cy5 vs wt-Rapamycin_Cy3 description:Spots with either a diameter smaller than 120 microm, or fluorescence intensity for Cy3 and Cy5 lower than 150 units, were not considered for further analysis. Intensities for were normalised by the ratio of medians.
9 GSM290541 Yeast_wt+Rapamycin_Cy3 vs wt-Rapamycin_Cy5 6,223 Universitat Autonoma de Barcelona 2008-05-21 [cDNA Array] Yeast_ALL DNA chip (GPL4069) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:wild type yeast strain in log phase culture, Rapamycin-treated cells wild type yeast strain in log phase culture, Mock-treated cells title:Yeast_wt+Rapamycin_Cy3 vs wt-Rapamycin_Cy5 description:Spots with either a diameter smaller than 120 microm, or fluorescence intensity for Cy3 and Cy5 lower than 150 units, were not considered for further analysis. Intensities for were normalised by the ratio of medians.
10 GSM290544 Yeast_ptc1+Rapamycin_Cy5 vs ptc1-Rapamycin_Cy3 6,223 Universitat Autonoma de Barcelona 2008-05-21 [cDNA Array] Yeast_ALL DNA chip (GPL4069) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:ptc1 yeast strain in log phase culture, Rapamycin-treated cells ptc1 yeast strain in log phase culture, Mock-treated cells title:Yeast_ptc1+Rapamycin_Cy5 vs ptc1-Rapamycin_Cy3 description:Spots with either a diameter smaller than 120 microm, or fluorescence intensity for Cy3 and Cy5 lower than 150 units, were not considered for further analysis. Intensities for were normalised by the ratio of medians.
11 GSM290543 Yeast_ptc1+Rapamycin_Cy3 vs ptc1-Rapamycin_Cy5 6,223 Universitat Autonoma de Barcelona 2008-05-21 [cDNA Array] Yeast_ALL DNA chip (GPL4069) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:ptc1 yeast strain in log phase culture, Rapamycin-treated cells ptc1 yeast strain in log phase culture, Mock-treated cells title:Yeast_ptc1+Rapamycin_Cy3 vs ptc1-Rapamycin_Cy5 description:Spots with either a diameter smaller than 120 microm, or fluorescence intensity for Cy3 and Cy5 lower than 150 units, were not considered for further analysis. Intensities for were normalised by the ratio of medians.
12 GSM344583 Yeast transcriptional response to high (20%) glucose.5 6,309 Universitat de València 2008-11-21 [cDNA Array] FHCRC Yeast Amplicon v1.1 (GPL1914) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast cells 1 hour in 20% glucose Yeast cells 1 hour in 2% glucose title:Yeast transcriptional response to high (20%) glucose.5 description:No more description is needed
13 GSM344286 Yeast transcriptional response to high (20%) glucose.4 6,309 Universitat de València 2008-11-20 [cDNA Array] FHCRC Yeast Amplicon v1.1 (GPL1914) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast cells 1 hour in 2% glucose Yeast cells 1 hour in 20% glucose title:Yeast transcriptional response to high (20%) glucose.4 description:No more description is needed
14 GSM341373 Yeast transcriptional response to high (20%) glucose.3 6,309 Universitat de València 2008-11-10 [cDNA Array] FHCRC Yeast Amplicon v1.1 (GPL1914) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast cells 1 hour in 2% glucose Yeast cells 1 hour in 20% glucose title:Yeast transcriptional response to high (20%) glucose.3 description:No more description is needed
15 GSM341372 Yeast transcriptional response to high (20%) glucose.2 6,309 Universitat de València 2008-11-10 [cDNA Array] FHCRC Yeast Amplicon v1.1 (GPL1914) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast cells 1 hour in 20% glucose Yeast cells 1 hour in 2% glucose title:Yeast transcriptional response to high (20%) glucose.2 description:No more description is needed
16 GSM341370 Yeast transcriptional response to high (20%) glucose.1 6,309 Universitat de València 2008-11-10 [cDNA Array] FHCRC Yeast Amplicon v1.1 (GPL1914) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Yeast cells 1 hour in 2% glucose Yeast cells 1 hour in 20% glucose title:Yeast transcriptional response to high (20%) glucose.1 description:No more description is needed
17 GSM434026 Yeast slt2 deficient 2 hours rep3 5,814 Universidad Autonoma de Madrid 2009-07-28 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae liquid culture title:Yeast slt2 deficient 2 hours rep3 description:Treated slt2 deficient cells
18 GSM434025 Yeast slt2 deficient 2 hours rep2 5,814 Universidad Autonoma de Madrid 2009-07-28 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae liquid culture title:Yeast slt2 deficient 2 hours rep2 description:Treated slt2 deficient cells
19 GSM434024 Yeast slt2 deficient 2 hours rep1 5,814 Universidad Autonoma de Madrid 2009-07-28 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae liquid culture title:Yeast slt2 deficient 2 hours rep1 description:Treated slt2 deficient cells
20 GSM434023 Yeast slt2 deficient 0 minutes rep3 5,814 Universidad Autonoma de Madrid 2009-07-28 [GeneChip] [Yeast_2] Affymetrix Yeast Genome 2.0 Array (GPL2529) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Saccharomyces cerevisiae liquid culture title:Yeast slt2 deficient 0 minutes rep3 description:Untreated slt2 deficient cells
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