Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,432)
  Primates
(665)
  Rodents
(7,826)
  Mammals
(399)
  Vertebrates
(731)
  Invertebrates
(1,567)
  Plants
(3,435)
  Bacteria
(998)
  Viruses
(14)
  Phages
(0)
  Unclassified
(76)
  All
(33,163)
 
  SAGE NlaIII
(2)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(806)
  Tiling Array
(260)
  cDNA Array
(1,292)
  Oligo Array
(981)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(90)
  Other
(0)
  All
(3,435)
 
  brain
(5)
  blood
(8)
  connective
(27)
  reproductive
(1)
  muscular
(0)
  digestive
(0)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(3)
  embryo
(0)
  adult aerial structure
(345)
  young aerial structure
(635)
  root
(100)
  meristem/growing tissue
(127)
  flower/sexual organ
(107)
  seed/fruit/grain
(251)
  pooled
(157)
  unclassified
(1,669)
  all
(3,435)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM414747 tag of rice callus 717,904 Beijing Genomics Institute at Shenzhen 2009-06-08 [SAGE NlaIII] SAGE:17:NlaIII:Oryza sativa (GPL8684) SAGE Oryza sativa
Oryza sativa
callus callus of rice
2 GSM409318 Endogenous small RNAs from shoot apex of rice - replicate 3 78,808 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa
meristem/growing tissue Endogenous small RNAs from shoot apex of rice - replicate 3
3 GSM409313 Endogenous small RNAs from root apex of rice - replicate 1 73,710 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa
meristem/growing tissue Endogenous small RNAs from root apex of rice - replicate 1
4 GSM414487 P35S::EBB1_Apex_rep1 61,413 Michigan Technological University 2009-06-08 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
meristem/growing tissue Apices from EBB1-overexpressing plant
5 GSM414488 P35S::EBB1_Apex_rep2 61,413 Michigan Technological University 2009-06-08 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
meristem/growing tissue Apices from EBB1-overexpressing plant
6 GSM414489 Control_Apex_rep1 61,413 Michigan Technological University 2009-06-08 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
meristem/growing tissue Apices from control
7 GSM414490 Control_Apex_rep2 61,413 Michigan Technological University 2009-06-08 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus tremula x Populus alba
Populus tremula x Populus alba
meristem/growing tissue Apices from control
8 GSM421481 Clone RM5_Root_C_90h_rep1 61,413 University of Georgia 2009-06-24 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus fremontii x Populus angustifolia
Populus fremontii x Populus angustifolia
meristem/growing tissue Root tip, unwounded control, 90 hr
9 GSM421482 Clone RM5_Root_C_90h_rep2 61,413 University of Georgia 2009-06-24 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus fremontii x Populus angustifolia
Populus fremontii x Populus angustifolia
meristem/growing tissue Root tip, unwounded control, 90 hr
10 GSM421483 Clone RM5_Root_W_90h_rep1 61,413 University of Georgia 2009-06-24 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus fremontii x Populus angustifolia
Populus fremontii x Populus angustifolia
meristem/growing tissue Root tip, wounded, 90 hr
11 GSM421484 Clone RM5_Root_W_90h_rep2 61,413 University of Georgia 2009-06-24 [GeneChip] [Poplar] Affymetrix Poplar Genome Array (GPL4359) RNA Populus fremontii x Populus angustifolia
Populus fremontii x Populus angustifolia
meristem/growing tissue Root tip, wounded, 90 hr
12 GSM409315 Endogenous small RNAs from root apex of rice - replicate 3 59,760 University of California Davis 2009-05-27 [HT Sequencing] 454 GS (Oryza sativa) (GPL9388) SRA Oryza sativa
Oryza sativa
meristem/growing tissue Endogenous small RNAs from root apex of rice - replicate 3
13 GSM409771 Nipponbare_shoot 3-4weeks, biological rep1 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group
meristem/growing tissue shoot 3-4weeks
14 GSM409772 Nipponbare_shoot 3-4weeks, biological rep2 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group
meristem/growing tissue shoot 3-4weeks
15 GSM409773 Nipponbare_shoot 3-4weeks, biological rep3 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group
meristem/growing tissue shoot 3-4weeks
16 GSM409774 Nipponbare_shoot 3-4weeks, biological rep5 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Japonica Group
Oryza sativa Japonica Group
meristem/growing tissue shoot 3-4weeks
17 GSM409775 9311_shoot 3-4weeks, biological rep1 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Indica Group
Oryza sativa Indica Group
meristem/growing tissue shoot 3-4weeks
18 GSM409776 9311_shoot 3-4weeks, biological rep2 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Indica Group
Oryza sativa Indica Group
meristem/growing tissue shoot 3-4weeks
19 GSM409777 9311_shoot 3-4weeks, biological rep3 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Indica Group
Oryza sativa Indica Group
meristem/growing tissue shoot 3-4weeks
20 GSM409778 9311_shoot 3-4weeks, biological rep4 57,381 National Institute of Genetics 2009-05-29 [GeneChip] [Rice] Affymetrix Rice Genome Array (GPL2025) RNA Oryza sativa Indica Group
Oryza sativa Indica Group
meristem/growing tissue shoot 3-4weeks
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