Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(92)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(366)
  GeneChip
(31,260)
  Tiling Array
(5,692)
  cDNA Array
(24,724)
  Oligo Array
(35,607)
  Bead Array
(2,290)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(7,427)
  Other
(120)
  All
(107,706)
 
  brain
(324)
  blood
(1,302)
  connective
(232)
  reproductive
(482)
  muscular
(29)
  digestive
(52)
  liver
(0)
  lung
(77)
  urinary
(53)
  endo/exo-crine
(129)
  embryo
(177)
  adult aerial structure
(15,762)
  young aerial structure
(9,385)
  root
(5,765)
  meristem/growing tissue
(2,624)
  flower/sexual organ
(3,659)
  seed/fruit/grain
(3,775)
  pooled
(7,302)
  unclassified
(56,577)
  all
(107,706)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM816975 Maize_waterlogging_4h 4,136,457 Cold Spring Harbor Labs 2011-10-14 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root Maize whole root
2 GSM816974 Maize_waterlogging_0h 3,811,363 Cold Spring Harbor Labs 2011-10-14 [HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141) SRA Zea mays
Zea mays
root Maize whole root
3 GSM717701 Small RNAs from Musa acuminata immature fruit 2,526,944 University of Delaware 2011-04-29 [HT Sequencing] Illumina Genome Analyzer II (Musa acuminata) (GPL13467) SRA Musa acuminata
Musa acuminata
root Roots
4 GSM816711 root, -N rep2 2,404,105 University of Delaware 2011-10-13 [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) SRA Oryza sativa
Oryza sativa
root root, nitrogen-deficient medium
5 GSM717698 Small RNAs from Mimulus guttatus roots 2,202,495 University of Delaware 2011-04-29 [HT Sequencing] Illumina Genome Analyzer II (Mimulus guttatus) (GPL13466) SRA Mimulus guttatus
Mimulus guttatus
root Roots
6 GSM769280 Arachis hypogaea Nodule 2,020,754 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Arachis hypogaea) (GPL13999) SRA Arachis hypogaea
Arachis hypogaea
root Nodule
7 GSM803584 Small RNAs from Solanum tuberosum stolon 1,929,804 University of Delaware 2011-09-29 [HT Sequencing] Illumina Genome Analyzer II (Solanum tuberosum) (GPL13899) SRA Solanum tuberosum
Solanum tuberosum
root Small RNAs from Solanum tuberosum stolon
8 GSM769278 Medicago truncatula Root Knot 1,900,991 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345) SRA Medicago truncatula
Medicago truncatula
root Root Knot
9 GSM816705 root, control rep2 1,833,831 University of Delaware 2011-10-13 [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) SRA Oryza sativa
Oryza sativa
root root, control
10 GSM816713 root, -K rep2 1,690,751 University of Delaware 2011-10-13 [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) SRA Oryza sativa
Oryza sativa
root root, potassium-deficient medium
11 GSM769289 Phaseolus vulgaris Root 1,656,758 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Phaseolus vulgaris) (GPL14000) SRA Phaseolus vulgaris
Phaseolus vulgaris
root Root
12 GSM816707 root, -P rep2 1,634,235 University of Delaware 2011-10-13 [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) SRA Oryza sativa
Oryza sativa
root root, phosphate-deficient medium
13 GSM769273 Medicago truncatula Root 1,514,812 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345) SRA Medicago truncatula
Medicago truncatula
root Root
14 GSM769291 Phaseolus vulgaris Nodule 1,464,614 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Phaseolus vulgaris) (GPL14000) SRA Phaseolus vulgaris
Phaseolus vulgaris
root Nodule
15 GSM816709 root, -S rep2 1,459,476 University of Delaware 2011-10-13 [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) SRA Oryza sativa
Oryza sativa
root root, sulfate-deficient medium
16 GSM769288 Glycine max Williams 82 inoculated Stripped Root 1,426,735 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192) SRA Glycine max
Glycine max
root inoculated Stripped Root
17 GSM816715 root, -K +salt rep2 1,422,550 University of Delaware 2011-10-13 [HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316) SRA Oryza sativa
Oryza sativa
root root, potassium-deficient medium +salt
18 GSM769275 Medicago truncatula Nodule 1,295,567 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345) SRA Medicago truncatula
Medicago truncatula
root Nodule
19 GSM769283 Glycine max Nodule 1,267,816 University of Delaware 2011-07-29 [HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192) SRA Glycine max
Glycine max
root Nodule
20 GSM803575 Small RNAs from Setaria italica roots 1,149,125 University of Delaware 2011-09-29 [HT Sequencing] Illumina Genome Analyzer II (Setaria italica) (GPL14635) SRA Setaria italica
Setaria italica
root Roots
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