Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Plants
(93,301)

Bacteria
(39,613)

Viruses
(1,263)

SAGE RsaI
(0)

SAGE Sau3A
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

All
(93,301)

liver
(0)

adult aerial structure
(12,240)

young aerial structure
(8,419)

root
(4,862)

meristem/growing tissue
(2,307)

flower/sexual organ
(3,159)

seed/fruit/grain
(3,159)

pooled
(6,762)

unclassified
(49,859)

all
(93,301)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM816975	Maize_waterlogging_4h	4,136,457	Cold Spring Harbor Labs	2011-10-14	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	Maize whole root
2	GSM816974	Maize_waterlogging_0h	3,811,363	Cold Spring Harbor Labs	2011-10-14	[HT Sequencing] Illumina Genome Analyzer (Zea mays) (GPL9141)	SRA	Zea mays	root	Maize whole root
3	GSM717701	Small RNAs from Musa acuminata immature fruit	2,526,944	University of Delaware	2011-04-29	[HT Sequencing] Illumina Genome Analyzer II (Musa acuminata) (GPL13467)	SRA	Musa acuminata	root	Roots
4	GSM816711	root, -N rep2	2,404,105	University of Delaware	2011-10-13	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	root	root, nitrogen-deficient medium
5	GSM717698	Small RNAs from Mimulus guttatus roots	2,202,495	University of Delaware	2011-04-29	[HT Sequencing] Illumina Genome Analyzer II (Mimulus guttatus) (GPL13466)	SRA	Mimulus guttatus	root	Roots
6	GSM769280	Arachis hypogaea Nodule	2,020,754	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Arachis hypogaea) (GPL13999)	SRA	Arachis hypogaea	root	Nodule
7	GSM803584	Small RNAs from Solanum tuberosum stolon	1,929,804	University of Delaware	2011-09-29	[HT Sequencing] Illumina Genome Analyzer II (Solanum tuberosum) (GPL13899)	SRA	Solanum tuberosum	root	Small RNAs from Solanum tuberosum stolon
8	GSM769278	Medicago truncatula Root Knot	1,900,991	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345)	SRA	Medicago truncatula	root	Root Knot
9	GSM816705	root, control rep2	1,833,831	University of Delaware	2011-10-13	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	root	root, control
10	GSM816713	root, -K rep2	1,690,751	University of Delaware	2011-10-13	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	root	root, potassium-deficient medium
11	GSM769289	Phaseolus vulgaris Root	1,656,758	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Phaseolus vulgaris) (GPL14000)	SRA	Phaseolus vulgaris	root	Root
12	GSM816707	root, -P rep2	1,634,235	University of Delaware	2011-10-13	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	root	root, phosphate-deficient medium
13	GSM769273	Medicago truncatula Root	1,514,812	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345)	SRA	Medicago truncatula	root	Root
14	GSM769291	Phaseolus vulgaris Nodule	1,464,614	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Phaseolus vulgaris) (GPL14000)	SRA	Phaseolus vulgaris	root	Nodule
15	GSM816709	root, -S rep2	1,459,476	University of Delaware	2011-10-13	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	root	root, sulfate-deficient medium
16	GSM769288	Glycine max Williams 82 inoculated Stripped Root	1,426,735	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	root	inoculated Stripped Root
17	GSM816715	root, -K +salt rep2	1,422,550	University of Delaware	2011-10-13	[HT Sequencing] Illumina Genome Analyzer II (Oryza sativa) (GPL9316)	SRA	Oryza sativa	root	root, potassium-deficient medium +salt
18	GSM769275	Medicago truncatula Nodule	1,295,567	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Medicago truncatula) (GPL11345)	SRA	Medicago truncatula	root	Nodule
19	GSM769283	Glycine max Nodule	1,267,816	University of Delaware	2011-07-29	[HT Sequencing] Illumina Genome Analyzer II (Glycine max) (GPL11192)	SRA	Glycine max	root	Nodule
20	GSM803575	Small RNAs from Setaria italica roots	1,149,125	University of Delaware	2011-09-29	[HT Sequencing] Illumina Genome Analyzer II (Setaria italica) (GPL14635)	SRA	Setaria italica	root	Roots

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