Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(2,851)		   Primates
(60)		   Rodents
(2,590)		   Mammals
(41)		   Vertebrates
(39)		   Invertebrates
(59)		   Plants
(464)		   Bacteria
(78)		   Viruses
(0)		   Phages
(0)		   Unclassified
(120)		   All
(6,302)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(132)		   Tiling Array
(15)		   cDNA Array
(222)		   Oligo Array
(90)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(464)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(23)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(12)		   flower/sexual organ
(6)		   seed/fruit/grain
(0)		   pooled
(76)		   unclassified
(347)		   all
(464)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM37975 HSF1 wt replicate 1 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HSF1 wt cells grown at 39oC for 15 min title:HSF1 wt replicate 1 description:Total RNA isolated from HSF1 wt cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = HSF1 wt replicate 1
2 GSM37978 HSF1 wt replicate 2 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:HSF1 wt cells grown at 39oC for 15 min title:HSF1 wt replicate 2 description:Total RNA isolated from HSF1 wt cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = HSF1 wt replicate 2
3 GSM37979 hsf1-R206S/F256S replicate 1 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:hsf1-R206S/F256S cells grown at 39oC for 15 min title:hsf1-R206S/F256S replicate 1 description:Total RNA isolated from hsf1-R206S/F256S cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = hsf1-rf replicate 1
4 GSM37980 hsf1-R206S/F256S replicate 2 6,084 Kanazawa University 2004-12-22 [cDNA Array] GF100 GeneFilters (GPL205) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:hsf1-R206S/F256S cells grown at 39oC for 15 min title:hsf1-R206S/F256S replicate 2 description:Total RNA isolated from hsf1-R206S/F256S cells grown at 39oC for 15 min. cDNA labelling using oligo(dT) and 33P-dCTP Keywords = yeast Keywords = HSF1 Lot batch = hsf1-rf replicate 2
5 GSM37981 wild type 4 hours exposure to congo red 1 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 1 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
6 GSM37982 wild type 4 hours exposure to congo red 2 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 2 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
7 GSM37983 wild type 4 hours exposure to congo red 3 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 3 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
8 GSM37984 wild type 4 hours exposure to congo red 4 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 4 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
9 GSM37985 wild type 4 hours exposure to congo red 9 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 9 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
10 GSM37986 wild type 4 hours exposure to congo red 10 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 10 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
11 GSM37987 wild type 4 hours exposure to congo red 11 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 11 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
12 GSM37988 wild type 4 hours exposure to congo red 12 (cell wall chip) 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 12 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
13 GSM37993 yellow experiment 1 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 1 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
14 GSM37994 yellow experiment 2 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 2 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
15 GSM37995 yellow experiment 3 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 3 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
16 GSM37996 yellow experiment 4 896 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv02 (GPL1433) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) title:yellow experiment 4 description:S. cerevisiae was grown on YEPD. For yellow experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 6h. At this time cells were collected. Experiment was carried out hybridising the cDNA from the same RNA (from this culture) with both Cy3 and Cy5
17 GSM37989 wild type 4 hours exposure to congo red 5 (cell wall chip) 784 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv01 (GPL1428) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 5 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
18 GSM37990 wild type 4 hours exposure to congo red 6 (cell wall chip) 784 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv01 (GPL1428) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 6 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
19 GSM37991 wild type 4 hours exposure to congo red 7 (cell wall chip) 784 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv01 (GPL1428) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (Control mRNA: no treatment) BY4741 Strain (4 hours Congo Red treatment) title:wild type 4 hours exposure to congo red 7 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
20 GSM37992 wild type 4 hours exposure to congo red 8 (cell wall chip) 784 Facultad de Farmacia (UCM) 2004-12-22 [cDNA Array] Cell Wall Chip cwchv01 (GPL1428) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:BY4741 Strain (4 hours Congo Red treatment) BY4741 Strain (Control mRNA: no treatment) title:wild type 4 hours exposure to congo red 8 (cell wall chip) description:S. cerevisiae was grown on YEPD. For Congo Red experiments, yeast cells were grown overnight at 24 °C to an optical density 0.8 - 1 (A600). The culture was refreshed to 0.2 O.D and grown at 24 °C for 2h. Next, culture was divided into two parts. One continues growing under same conditions (non-treated culture) while the other was supplemented with Congo Red to a final concentration of 30 μg/ml. Cells were collected at 4 hours of growth, frozen at -80 °C and processed for RNA extraction.
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