Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,438)		   Primates
(205)		   Rodents
(12,530)		   Mammals
(774)		   Vertebrates
(1,152)		   Invertebrates
(3,917)		   Plants
(6,619)		   Bacteria
(2,962)		   Viruses
(50)		   Phages
(4)		   Unclassified
(282)		   All
(46,983)		  
  SAGE NlaIII
(31)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(47)		   GeneChip
(1,725)		   Tiling Array
(706)		   cDNA Array
(1,589)		   Oligo Array
(1,691)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(804)		   Other
(18)		   All
(6,619)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 rilkit-eqtl analysis (random pair design). Tools to optimize the use of RIL populations for natural diversity studies and QTL cloning (GSE28791) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2011-04-21 Arabidopsis thaliana
Arabidopsis thaliana		 11,225,628
(34,647 x 324) 		324 by_platform
by_series
2 Regulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids (GSE16136) [cDNA Array] SAM1.1a (GPL3333) Iowa State University 2009-05-15 Zea mays
Zea mays		 6,624,000
(19,200 x 345) 		345 by_platform
by_series
3 Analysis of the Saccharomyces cerevisiae Pan-Genome Reveals a Pool of Copy Number Variants Distributed in Diverse Yeast Strains From Differing Industrial Environments. (GSE26689) [cDNA Array] Agilent 024417 Saccharomyces bayanus and Saccharomyces cerevisiae (SMD Print_1667) (GPL11575) Stanford University 2011-01-18 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 6,171,648
(62,976 x 98) 		98 by_platform
by_series
4 Single-Stranded Annealing Induced by Re-Initiation of Replication Origins Provides a Novel and Efficient Mechanism for Generating Copy Number Expansion via Non-Allelic Homologous Recombination. (GSE41259) [cDNA Array] Li UCSF yeast 14062 v1.0 (GPL3412) University of California, San Francisco 2012-10-01 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 4,682,646
(14,062 x 333) 		1 332 by_platform
by_series
5 A Local Regulatory Network Around Three NAC Transcription Factors in Stress Responses and Senescence in Arabidopsis leaves (GSE46318) [cDNA Array] CATMA Arabidopsis V4 TAIR V9 spotted cDNA array (GPL16132) University of Warwick 2013-04-23 Arabidopsis thaliana
Arabidopsis thaliana		 4,290,132
(32,501 x 132) 		132 by_platform
by_series
6 eqtl analysis (random pair design)-Establishing the network of seed gene expression and analysis of its biodiversity (GSE16393) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.2 (GPL4346) INRA 2009-06-02 Arabidopsis thaliana
Arabidopsis thaliana		 4,050,560
(25,316 x 160) 		160 by_platform
by_series
7 Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.). (GSE25216) [cDNA Array] Loblolly pine 26K cDNA array v2.0, PtGen2 (GPL11184) University of Georgia 2010-11-09 Pinus taeda
Pinus taeda		 3,815,424
(26,496 x 144) 		144 by_platform
by_series
8 ISD-starch (initiation, synthesis, and degradation): an integrated approach toward the understanding of starch metabolism and formation in plants (GSE20964) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2010-03-19 Arabidopsis thaliana
Arabidopsis thaliana		 3,326,112
(34,647 x 96) 		96 by_platform
by_series
9 isd-starch-Initiation synthesis and degradation : an integrated approach toward the understanding of starch metabolism and formation in plants (GSE21793) [cDNA Array] URGV Arabidopsis thaliana 34.6K CATMA_v5 (GPL9553) INRA 2010-05-12 Arabidopsis thaliana
Arabidopsis thaliana		 3,326,112
(34,647 x 96) 		96 by_platform
by_series
10 A Local Regulatory Network Around Three NAC Transcription Factors in Stress Responses and Senescence in Arabidopsis leaves (expression between lines at timepoints). (GSE45183) [cDNA Array] CATMA Arabidopsis V4 TAIR V9 spotted cDNA array (GPL16132) University of Warwick 2013-03-14 Arabidopsis thaliana
Arabidopsis thaliana		 3,250,100
(32,501 x 100) 		100 by_platform
by_series
11 Gene expression profiling during storage root formation in sweet potato (GSE13809) [cDNA Array] PICME Sweetpotato 15K Series 1 (GPL6494) Austrian Research Centers GmbH 2008-12-03 Ipomoea batatas
Ipomoea batatas		 3,120,000
(30,000 x 104) 		104 by_platform
by_series
12 The transcriptional profiles of bluestem and Indian grass - Konza 2006 [Zea mays; Andropogon gerardii; Sorghastrum nutans] (GSE35492) [cDNA Array] Maize SAM1.2 Array (GPL4521) Yale University 2012-02-01 Andropogon gerardii
Andropogon gerardii		 3,104,640
(15,680 x 198) 		198 by_platform
by_series
13 Regulation of Gene Expression and Parent-of-Origin Effects in Maize Hybrids (GSE16136) [cDNA Array] SAM3.0 (GPL3538) Iowa State University 2009-05-15 Zea mays
Zea mays		 2,880,000
(16,000 x 180) 		180 by_platform
by_series
14 Loss of DNA replication control is a potent initiator of gene amplification (GSE22018) [cDNA Array] Li UCSF yeast 14062 v1.0 (GPL3412) University of California, San Francisco 2010-05-26 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 2,854,586
(14,062 x 203) 		203 by_platform
by_series
15 Expression patterns in stress conditions of 4 closely related yeast species from the Saccharomyces sensu stricto complex (GSE3406) [cDNA Array] UHN Yeast 6.4kv6 (GPL2910) The Weizmann Institute of Science 2005-10-03 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 2,493,696
(13,056 x 191) 		191 by_platform
by_series
16 multiplexage : dual-target hybridization microarray experiment-New developments towards a genetic and diagnosis use of plant mircoarrays (GSE29104) [cDNA Array] URGV Arabidopsis thaliana 25K CATMA_v2.3 (GPL6403) INRA 2011-05-06 Arabidopsis thaliana
Arabidopsis thaliana		 2,434,600
(25,900 x 94) 		50 44 by_platform
by_series
17 Defense mechanisms against herbivory: expression regulation of spruce gene family members representative of the phenylpropanoid pathway (GSE22116) [cDNA Array] Treenomix spruce 21.8K cDNA microarray (GPL5423) University of British Columbia 2010-06-03 Picea engelmannii x Picea glauca
Picea engelmannii x Picea glauca		 2,382,336
(25,344 x 94) 		94 by_platform
by_series
18 Heat, Cold and Stress adaptation in Potato (GSE2416) [cDNA Array] Potato 10k cDNA array version 2 (GPL1901) The Institute for Genomic Research 2005-03-18 Solanum tuberosum
Solanum tuberosum		 2,336,256
(32,448 x 72) 		36 36 by_platform
by_series
19 Potato responses to cold, heat and salt stress (GSE8205) [cDNA Array] Potato 10k cDNA array version 2 (GPL1901) Plant Genomics 2007-06-21 Solanum tuberosum
Solanum tuberosum		 2,336,256
(32,448 x 72) 		36 36 by_platform
by_series
20 Stress-dependent dynamics of chromatin remodeling in yeast: Dual roles for SWI/SNF in heat shock stress response (GSE7665) [cDNA Array] UT Austin Iyer yeast whole genome platform (GPL5076) University of Texas at Austin 2007-04-30 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 2,179,517
(13,051 x 167) 		127 40 by_platform
by_series
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