Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(105)		   Primates
(0)		   Rodents
(47)		   Mammals
(25)		   Vertebrates
(10)		   Invertebrates
(19)		   Plants
(73)		   Bacteria
(29)		   Viruses
(0)		   Phages
(0)		   Unclassified
(5)		   All
(315)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(2)		   Tiling Array
(11)		   cDNA Array
(18)		   Oligo Array
(41)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(1)		   Other
(0)		   All
(73)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9553 URGV Arabidopsis thaliana 34.6K CATMA_v5 34,647 INRA 2009-11-10 URGV (plant Genomic Research Unit) Arabidopsis thaliana
Arabidopsis thaliana		 cDNA Array spotted DNA/cDNA, URGV Arabidopsis thaliana 34.6K CATMA_v5, Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divide into 3 metablocks, each containing 64 blocks of 196 spots (14x14).
2 GPL4874 PICME Poplar 28K 4_2_5 27,648 INRA 2007-02-16 Austrian Research Centers, PICME Populus trichocarpa x Populus deltoides,Populus euphratica,Populus tremula x Populus alba
Populus trichocarpa x Populus deltoides,Populus euphratica,Populus tremula x Populus alba		 cDNA Array spotted DNA/cDNA, PICME Poplar 28K 4_2_5, Support: Corning GAPS II; Coating: Gamma Amino Propyl Silane Number of spots: 2727648 Number of pins/blocks: 48 Spottdistance in µm: 180 Recurrances spots/slide: 1 Number of spots vertical: 24 Number of spots horinzontal: 24 Vertical offset of first block in µm: 1200 Horizontal offset of first block in µm: 3150 Lot number 13705000B
3 GPL6403 URGV Arabidopsis thaliana 25K CATMA_v2.3 25,900 INRA 2008-01-23 URGV (Plant Genomic Research Unit) Arabidopsis thaliana
Arabidopsis thaliana		 cDNA Array spotted DNA/cDNA, URGV Arabidopsis thaliana 25K CATMA_v2.3, Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12)
4 GPL4346 URGV Arabidopsis thaliana 25K CATMA_v2.2 25,316 INRA 2006-09-20 URGV (Plant Genomic Research Unit) Arabidopsis thaliana
Arabidopsis thaliana		 cDNA Array spotted DNA/cDNA, URGV Arabidopsis thaliana 25K CATMA_v2.2, Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12)
5 GPL5337 URGV Arabidopsis thaliana 25K CATMA_v2.1 25,228 INRA 2007-05-29 INRA-URGV (Plant Genomic Research Unit) Arabidopsis thaliana
Arabidopsis thaliana		 cDNA Array spotted DNA/cDNA, URGV Arabidopsis thaliana 25K CATMA_v2.1, Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12). The arrray contains 24576 Gene Specific Tags (GST) and 615 Chloroplastic and Mitochondrial Tilling array probes.
6 GPL5336 URGV Arabidopsis thaliana 25K CATMA_v2 24,595 INRA 2007-05-29 INRA-URGV (Plant Genomic Research Unit) Arabidopsis thaliana
Arabidopsis thaliana		 cDNA Array spotted DNA/cDNA, URGV Arabidopsis thaliana 25K CATMA_v2, Corning Ultra-GAPS (TM) slides are spotted with 64 pins (8x8) therefore the spotted area is divided into 3 metablocks, each containning 64 blocks of 144 spots (12x12). The array contains 24576 Gene Specific Tags (GST)
7 GPL4347 CEA Saccharomyces cerevisiae 13k Whole Genome Microarray 13,031 Institut Curie 2006-09-20 in House Facility Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, CEA Saccharomyces cerevisiae 13k Whole Genome Microarray,
8 GPL1531 CEA_SGF:AIW 6,912 CEA 2004-10-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, CEA_SGF:AIW, Chip contains 6912 features (probes and controls): 6528 PCR products from Research Genetics ORF collection 384 controls features
9 GPL2887 CEA Yeast 7K Intergenic Microarray 6,814 Commissariat à L'Energie Atomique-Saclay 2005-09-23 in House Facility Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, CEA Yeast 7K Intergenic Microarray, -Platform: amino-silane coated glass slides (GAPS II, Corning) -S. cerevisiae intergenic regions amplified from S288C genomic DNA (ResGen) using the intergenic region primer oligonucleotides (ResGen) (Harismendy et al. EMBO J. 22(18): 4738-4747, 2003). The primers allow the amplification of the sequence located on either side of elements such as open reading frames, tRNAs, small nuclear RNAs, Ty elements, solo δ, etc. A complete description of the primers can be obtained on the web site (ftp://ftp.resgen.com/pub/genepairs/yeast_intergenic). -The PCR products were purified and spotted using an automated arrayer (MicroGrid II, BioRobotics)
10 GPL1383 Yeast genes 6,340 Ecole Normale Supérieure 2004-07-28 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, Yeast genes, Time-course analyses of the modifications of the yeast gene expression program which immediately follows addition of the antimitotic drug benomyl
11 GPL1271 Yeast Hitachi 77 6,272 Ecole Normale Superieure 2004-06-02 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, Yeast Hitachi 77, Yeast microarrays supplied by Hitachi. PCR products. Batch number 77. Keywords = yeast Keywords = transcriptome
12 GPL6649 CEA Saccharomyces cerevisiae 6k Whole Genome Microarray 6,152 Institut Curie 2008-03-26 in House Facility Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, CEA Saccharomyces cerevisiae 6k Whole Genome Microarray,
13 GPL8372 Genotoul/Biopuces Eurogentec Yeast 6K 20x21 5,884 LISBP INSA CNRS UMR5504 2009-04-01 Genotoul/Biopuces Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, Genotoul/Biopuces Eurogentec Yeast 6K 20x21, Dendrislides are prepared according to Trevisiol et al. 2003, New J. Chem. 27,1713-1719.
14 GPL9465 Laccaria bicolor 4.9K ADNc macroarray 4,891 INRA 2009-10-19 Eurogentec (Belgium) Laccaria bicolor
Laccaria bicolor		 cDNA Array spotted DNA/cDNA, Laccaria bicolor 4.9K ADNc macroarray,
15 GPL4887 Populus 4.6K cDNA macroarray 4,609 INRA 2007-02-22 Eurogentec (Belgium) Populus trichocarpa x Populus deltoides
Populus trichocarpa x Populus deltoides		 cDNA Array spotted DNA/cDNA, Populus 4.6K cDNA macroarray, A total of 4608 features were spotted on 70 cm2 Nylon filters in 384 blocks (24 horizontal x 16 vertical, corresponding to the 384-wells plates). Within blocks of 4x4 mm, cDNA from plates 1 to 12 were respectively spotted at positions 1, 3, 5, 7, 9, 11, 13, 15, 17, 19, 21 and 23 of a 5x5 grid (5 horizontal x 5 vertical). These positions are given in the 'XDotsReader ID' column of platform file. The XDotsReader ID also provide block position: vertical position, A to P; horizontal position, 1 to 24.
16 GPL1533 CEA_SGF:ABO 3,360 CEA 2004-10-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, CEA_SGF:ABO, Chip contains 3360 features (probes and controls): 3264 PCR products from Research Genetics ORF collection 96 controls features
17 GPL1534 CEA_SGF:ABP 3,264 CEA 2004-10-25 Saccharomyces cerevisiae
Saccharomyces cerevisiae		 cDNA Array spotted DNA/cDNA, CEA_SGF:ABP, Chip contains 3264 features (probes and controls): 3168 PCR products from Research Genetics ORF collection 96 controls features
18 GPL8373 Institut Pasteur of Lille Cichorium intybus 1.5k cDNA array 2,112 University Lille 1 2009-04-01 Institut Pasteur of Lille (France) Cichorium intybus
Cichorium intybus		 cDNA Array spotted DNA/cDNA, Institut Pasteur of Lille Cichorium intybus 1.5k cDNA array, Ci2kcDNA The Platform data table is a condensed representation of the array. The full array layout is linked below as a supplementary file.
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