Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page

An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Human (165)   Primates (0)   Rodents (23)   Mammals (0)   Vertebrates (0)   Invertebrates (0)   Plants (14)   Bacteria (3)   Viruses (0)   Phages (0)   Unclassified (0)   All (222)

SAGE NlaIII (0)   SAGE RsaI (0)   SAGE Sau3A (0)   MPSS (0)   GeneChip (0)   Tiling Array (0)   cDNA Array (9)   Oligo Array (4)   Bead Array (0)   Protein Array (0)   Antibody (0)   RT-PCR (0)   HT-Seq (0)   Other (0)   All (14)   Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification Keywords used for the classification are shown with bold font. 1 GPL1722 Rice Chromosome 4 Tilling-Path 14,554 California Institute of Technology 2004-11-29 Oryza sativa cDNA Array spotted DNA/cDNA, Rice Chromosome 4 Tilling-Path, The array represent a minimal tilling-path coving rice chromosome 4. This tilling-path was assembled using 14,742 randomly sheared shotgun subclone fragments. All subclone fragments were PCR amplified using universal primers and plasmids containing the genomic DNA fragment as the template. DNA gel analysis was performed for all fragments and poor amplification were not included here. In the final count by comparing with the TIGR version 2.0 sequence, 95.5% of the sequence of this chromosome is covered by the array. Keywords = rice Keywords = chromosome 4 Keywords = tilling-path 2 GPL1508 Pinus taeda cDNA 9,204 North Carolina State University 2004-10-13 Pinus taeda cDNA Array spotted DNA/cDNA, Pinus taeda cDNA, The microarray contains ESTs selected from 6 Xylem libraries: 1. NXCI - ESTs from juvenile compression wood of Pinus taeda (loblolly pine) 2. NXLV - ESTs from transitional/mature late wood of Pinus taeda (loblolly pine) 3. NXNV - ESTs from mature normal wood of Pinus taeda (loblolly pine) 4. NXPV - ESTs from transitional planings wood of Pinus taeda (loblolly pine) 5. NXRV - ESTs from root wood of Pinus taeda (loblolly pine) 6. NXSI - ESTs from juvenile side wood of Pinus taeda (loblolly pine) , a Pollen Cone library, and a Shoot tip library. The ESTs were PCR amplified, purified, denatured in 50% DMSO and printed on Corning GapsII amino-silane coated slides. 3 GPL1531 CEA_SGF:AIW 6,912 CEA 2004-10-25 Saccharomyces cerevisiae cDNA Array spotted DNA/cDNA, CEA_SGF:AIW, Chip contains 6912 features (probes and controls): 6528 PCR products from Research Genetics ORF collection 384 controls features 4 GPL1689 Struhl Lab Yeast Double Intergenic Array 6,438 Harvard Medical School 2004-11-04 Saccharomyces cerevisiae cDNA Array spotted DNA/cDNA, Struhl Lab Yeast Double Intergenic Array, All Saccharomyces cerevisiae intergenic regions 5 GPL1756 Emericella nidulans EST-based chip primary data 4,352 University of Debrecen 2004-12-21 Emericella nidulans cDNA Array spotted DNA/cDNA, Emericella nidulans EST-based chip primary data, Double printed Emericella nidulans chips containing 3533 unique EST sequences in 4352 spots. 6 GPL1752 Emericella nidulans EST-based chip normalized data 3,533 University of Debrecen 2004-12-17 Emericella nidulans cDNA Array spotted DNA/cDNA, Emericella nidulans EST-based chip normalized data, Double printed Emericella nidulans chips containing 3533 unique EST sequences in 4352 spots. 7 GPL1533 CEA_SGF:ABO 3,360 CEA 2004-10-25 Saccharomyces cerevisiae cDNA Array spotted DNA/cDNA, CEA_SGF:ABO, Chip contains 3360 features (probes and controls): 3264 PCR products from Research Genetics ORF collection 96 controls features 8 GPL1534 CEA_SGF:ABP 3,264 CEA 2004-10-25 Saccharomyces cerevisiae cDNA Array spotted DNA/cDNA, CEA_SGF:ABP, Chip contains 3264 features (probes and controls): 3168 PCR products from Research Genetics ORF collection 96 controls features 9 GPL1730 coffee nylon arrays 3,072 UNICAMP 2004-12-06 Coffea hybrid cultivar cDNA Array spotted DNA/cDNA, coffee nylon arrays, Nylon membranes containing coffee ESTs from subtracted cDNA librares. Plasmid clones were used. A set of sixteen 96-well plates was spotted on two nylon filters (85 mm x 125 mm) in a 4 x 4 array configuration, with a 96 pins hand-held array tool