Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(88)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(298)		   GeneChip
(27,371)		   Tiling Array
(5,043)		   cDNA Array
(23,783)		   Oligo Array
(30,226)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(4,443)		   Other
(117)		   All
(91,454)		  
  brain
(207)		   blood
(97)		   connective
(59)		   reproductive
(85)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(2)		   urinary
(7)		   endo/exo-crine
(0)		   embryo
(32)		   adult aerial structure
(2,637)		   young aerial structure
(921)		   root
(1,502)		   meristem/growing tissue
(294)		   flower/sexual organ
(436)		   seed/fruit/grain
(637)		   pooled
(1,954)		   unclassified
(14,913)		   all
(23,783)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM999 YP sucrose vs reference pool 9,216 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y12 (GPL52) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:pool sucrose title:YP sucrose vs reference pool description:ScanAlyze version 2.33 scanning software was used. Keywords = starvation Keywords = YPD-stationary-phase Lot batch = y12n115
2 GSM998 Sporulation t11hrs 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 t11hrs title:Sporulation t11hrs description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo11
3 GSM997 YP fructose vs reference pool 9,216 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y12 (GPL52) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:pool fructose title:YP fructose vs reference pool description:ScanAlyze version 2.33 scanning software was used. Keywords = starvation Keywords = YPD-stationary-phase Lot batch = y12n114
4 GSM996 Sporulation t9hrs 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 t9hrs title:Sporulation t9hrs description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo9
5 GSM995 Sporulation t7hrs 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 t7hrs title:Sporulation t7hrs description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo7
6 GSM994 Sporulation t5hrs 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 t5hrs title:Sporulation t5hrs description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo5
7 GSM993 Sporulation t2hrs 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 t2hrs title:Sporulation t2hrs description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo2
8 GSM992 Sporulation t0 6,384 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] yeast_v1_2.2 (GPL67) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:t0 title:Sporulation t0 description:This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators ScanAlyze version unknown scanning software was used. Keywords = Sporulation Keywords = Transcription Factors Lot batch = spo0
9 GSM991 YP galactose vs reference pool 9,216 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y12 (GPL52) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:pool galactose title:YP galactose vs reference pool description:ScanAlyze version 2.33 scanning software was used. Keywords = starvation Keywords = YPD-stationary-phase Lot batch = y12n111
10 GSM990 YP glucose vs reference pool 9,216 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y12 (GPL52) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:pool glucose title:YP glucose vs reference pool description:ScanAlyze version 2.33 scanning software was used. Keywords = starvation Keywords = YPD-stationary-phase Lot batch = y12n110
11 GSM989 alpha factor release sample019 7,680 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y744 (GPL59) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:asynchronous control 19 title:alpha factor release sample019 description:ScanAlyze version 2.33 scanning software was used. Keywords = Cell-cycle Keywords = Alpha factor block-release Lot batch = y744n89
12 GSM988 alpha factor release sample017 7,680 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y744 (GPL59) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:asynchronous control 17 title:alpha factor release sample017 description:ScanAlyze version 2.33 scanning software was used. Keywords = Cell-cycle Keywords = Alpha factor block-release Lot batch = y744n88
13 GSM987 constant 0.32 mM H2O2 (40 min) rescan 8,832 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y80print2 (GPL63) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:time = 0 min time = 40 min title:constant 0.32 mM H2O2 (40 min) rescan description:ScanAlyze version unknown scanning software was used. Keywords = starvation Keywords = YPD-stationary-phase Lot batch = y80-813
14 GSM986 DBYyap1- 37degree heat - 20 min (redo) 9,216 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y11 (GPL51) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:time = 0 min (at 30 degrees) time = 20 min (at 37 degrees) title:DBYyap1- 37degree heat - 20 min (redo) description:ScanAlyze version 2.05 scanning software was used. Keywords = starvation Keywords = YPD-stationary-phase Lot batch = y11-85
15 GSM985 Elutriation2:Sample2:Time6.5hrs 7,680 Stanford Microarray Database (SMD) 2002-02-08 [cDNA Array] y744 (GPL59) RNA Saccharomyces cerevisiae
Saccharomyces cerevisiae		 unclassified source_name:Ref Pool 2.2.14 title:Elutriation2:Sample2:Time6.5hrs description:ScanAlyze version 2.33 scanning software was used. Keywords = Cell-cycle Keywords = Elutriation Lot batch = y744n84
16 GSM984853 Bambusa_oldhamii_100c 1,176 National Taiwan University 2012-08-14 [cDNA Array] NTU Bambusa oldhamii spotted array (GPL15916) RNA Bambusa oldhamii
Bambusa oldhamii		 meristem/growing tissue the middle region of etiolated shoots the top region of green shoots
17 GSM984852 Bambusa_oldhamii_100b 1,176 National Taiwan University 2012-08-14 [cDNA Array] NTU Bambusa oldhamii spotted array (GPL15916) RNA Bambusa oldhamii
Bambusa oldhamii		 meristem/growing tissue the middle region of etiolated shoots the middle region of green shoots
18 GSM984851 Bambusa_oldhamii_100a 1,176 National Taiwan University 2012-08-14 [cDNA Array] NTU Bambusa oldhamii spotted array (GPL15916) RNA Bambusa oldhamii
Bambusa oldhamii		 meristem/growing tissue the middle region of etiolated shoots the culm base of green shoots
19 GSM984850 Bambusa_oldhamii_wa 1,176 National Taiwan University 2012-08-14 [cDNA Array] NTU Bambusa oldhamii spotted array (GPL15916) RNA Bambusa oldhamii
Bambusa oldhamii		 meristem/growing tissue the middle region of etiolated shoots the culm base of etiolated shoots
20 GSM984849 Bambusa_oldhamii_wc 1,176 National Taiwan University 2012-08-14 [cDNA Array] NTU Bambusa oldhamii spotted array (GPL15916) RNA Bambusa oldhamii
Bambusa oldhamii		 meristem/growing tissue the middle region of etiolated shoots the top region of etiolated shoots
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