Gene Expression Omnibus (GEO) Overview

RSS

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(3,705)

Primates
(37)

Rodents
(1,748)

Mammals
(295)

Vertebrates
(402)

Invertebrates
(1,004)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(3)

Tiling Array
(0)

cDNA Array
(3)

Oligo Array
(13)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(16)

Other
(1)

All
(37)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL4510	SAGE:17:NlaIII:Chlorocebus aethiops	24,475		2006-10-30		Chlorocebus aethiops	SAGE NlaIII	SAGE NlaIII, SAGE:17:NlaIII:Chlorocebus aethiops, This is a virtual platform for SAGE libraries generated for Chlorocebus aethiops using NlaIII as an anchor enzyme.
2	GPL10547	Illumina Genome Analyzer (Pan troglodytes)	0		2010-06-16		Pan troglodytes	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Pan troglodytes),
3	GPL10548	Illumina Genome Analyzer II (Pongo pygmaeus)	0		2010-06-16		Pongo pygmaeus	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Pongo pygmaeus),
4	GPL13267	Illumina Genome Analyzer (Macaca mulatta)	0		2011-03-10		Macaca mulatta	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Macaca mulatta),
5	GPL13663	Illumina Genome Analyzer (Macaca fascicularis)	0		2011-05-31		Macaca fascicularis	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer (Macaca fascicularis),
6	GPL13766	Illumina Genome Analyzer IIx (Macaca mulatta)	0		2011-06-24		Macaca mulatta	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Macaca mulatta),
7	GPL13800	Illumina Genome Analyzer IIx (Pongo pygmaeus)	0		2011-07-01		Pongo pygmaeus	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Pongo pygmaeus),
8	GPL13801	Illumina Genome Analyzer IIx (Gorilla gorilla)	0		2011-07-01		Gorilla gorilla	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Gorilla gorilla),
9	GPL13802	Illumina Genome Analyzer IIx (Pan troglodytes)	0		2011-07-01		Pan troglodytes	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Pan troglodytes),
10	GPL13803	Illumina Genome Analyzer IIx (Pan paniscus)	0		2011-07-01		Pan paniscus	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Pan paniscus),
11	GPL14954	Illumina HiSeq 2000 (Macaca mulatta)	0		2011-12-03		Macaca mulatta	HT Sequencing	high-throughput sequencing, Illumina HiSeq 2000 (Macaca mulatta),
12	GPL15434	Illumina HiSeq 1000 (Pan troglodytes)	0		2012-04-11		Pan troglodytes	HT Sequencing	high-throughput sequencing, Illumina HiSeq 1000 (Pan troglodytes),
13	GPL15440	Illumina Genome Analyzer IIx (Papio hamadryas)	0		2012-04-13		Papio hamadryas	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Papio hamadryas),
14	GPL16397	Illumina Genome Analyzer IIx (Chlorocebus aethiops)	0		2012-12-19		Chlorocebus aethiops	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer IIx (Chlorocebus aethiops),
15	GPL16809	Illumina HiSeq 2000 (Pan troglodytes)	0		2013-03-18		Pan troglodytes	HT Sequencing	high-throughput sequencing, Illumina HiSeq 2000 (Pan troglodytes),
16	GPL9160	Illumina Genome Analyzer II (Macaca mulatta)	0		2009-09-08		Macaca mulatta	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Macaca mulatta),
17	GPL9378	Illumina Genome Analyzer II (Pan troglodytes)	0		2009-10-07		Pan troglodytes	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Pan troglodytes),
18	GPL3535	[Rhesus] Affymetrix Rhesus Macaque Genome Array	52,865	Affymetrix, Inc.	2006-03-09	Affymetrix	Macaca mulatta	GeneChip	in situ oligonucleotide, [Rhesus] Affymetrix Rhesus Macaque Genome Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip Rhesus Macaque Genome Array enables researcher to study gene expression in the rhesus animal model by simultaneously interrogating over 47,000 M. mulatta transcripts. Additionally, the Rhesus Genome Array contains several relevant viral organisms for studying host-disease immune response. The sequence information for this array was selected from public data sources including data from the University of Nebraska, the Baylor School of Medicine - Rhesus Macaque Whole Genome Shotgun Assembly (October 1, 2004), and GenBank STSs, ESTs, and mRNAs up to March 30, 2005. Additionally, probe sets were designed to interrogate rhesus transcripts orthologous to the 3' end of human transcripts (GeneChip Human Genome U133 Plus 2.0 Array and RefSeq sequences up to March 2005). Acknowledgements: Affymetrix, Inc. would like to acknowledge Dr. Rob Norgren from the University of Nebraska for his invaluable input into the design of the Rhesus Genome Array. Keywords = high density oligonucleotide array
19	GPL10157	Agilent-024422 SurePrint G3 Chimpanzee CGH Microarray 4x180K (Feature Number version)	180,880	Agilent Technologies	2010-03-09	Agilent Technologies	Pan troglodytes	Oligo Array	in situ oligonucleotide, Agilent-024422 SurePrint G3 Chimpanzee CGH Microarray 4x180K (Feature Number version), SurePrint G3 Chimpanzee CGH Microarray 4x180K Arrays of this design have barcodes that begin with 16024422 or 2524422. Data table annotations based on build panTro2:GSCv2.1:Mar2006. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
20	GPL10158	Agilent-024419 SurePrint G3 Rhesus Macaque CGH Microarray 4x180K (Feature Number version)	180,880	Agilent Technologies	2010-03-09	Agilent Technologies	Macaca mulatta	Oligo Array	in situ oligonucleotide, Agilent-024419 SurePrint G3 Rhesus Macaque CGH Microarray 4x180K (Feature Number version), SurePrint G3 Rhesus Macaque CGH Microarray 4x180K Arrays of this design have barcodes that begin with 16024419 or 2524419. Data table annotations based on build rheMac2:Mmul_051212:Jan2006. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

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