Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(6)		   SAGE RsaI
(1)		   SAGE Sau3A
(2)		   MPSS
(4)		   GeneChip
(133)		   Tiling Array
(141)		   cDNA Array
(403)		   Oligo Array
(857)		   Bead Array
(57)		   Protein Array
(0)		   Antibody
(2)		   RT-PCR
(50)		   HT-Seq
(79)		   Other
(13)		   All
(1,748)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL7245 Ajou University Mus musculus Array 24K 24,620 Ajou University 2008-09-03 Illumina Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Ajou University Mus musculus Array 24K,
2 GPL10296 CHB Illumina MouseRef-8 v2.0 expression beadchip 18,097 Children's Hospital of Boston 2010-04-06 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, CHB Illumina MouseRef-8 v2.0 expression beadchip,
3 GPL5943 Emory_University Mouse-6 Expression BeadChip 47K 46,628 Emory University 2007-10-01 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Emory_University Mouse-6 Expression BeadChip 47K, The Sentrix Mouse-6 BeadChip can be used to study expression of over 47,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Each array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by a sequential hybridization process called array decoding. The probes are fully screened all-full-length 50-mers and the assay requires 50-100ng of total RNA input.
4 GPL10330 Illumina GoldenGate mouse SNP Ube3a-Snurf/Snrpn region 1,420 RIKEN 2010-04-15 Illumina Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina GoldenGate mouse SNP Ube3a-Snurf/Snrpn region,
5 GPL5402 Illumina Mouse 6x Beads-Chip 46,115 NCBI/NLM/NIH 2007-06-20 Illumina Inc. San Diego, California, USA Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina Mouse 6x Beads-Chip, The Mouse-6 Expression BeadChip can be used in high-confidence studies to profile more than 47,000 well-annotated NCBI RefSeq transcripts per sample. Users can determine whole-genome expression profiles for 6 samples in parallel on one single BeadChip. The array is composed of 3 micron features with 30 times feature redundancy in average. All features are quality controlled by sequential DECODING hybridizations process. The length of the probes is. 50-100ng total RNA is required for each assay.
6 GPL10242 Illumina Mouse Ref-6 V1 46,643 Univ of Alabama at Birmingham 2010-03-23 Illumina, Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina Mouse Ref-6 V1, Approximately 46,000 RefSeq and EST transcripts are present on the array in the form of oligo-coated (50mer) beads.
7 GPL6333 Illumina Mouse Ref-6 V1 46,120 NCBI/NLM/NIH 2007-12-31 Illumina, Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina Mouse Ref-6 V1,
8 GPL8180 Illumina Mouse v1 MicroRNA expression beadchip 380 Illumina Inc. 2009-02-11 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina Mouse v1 MicroRNA expression beadchip, The mouse miRNA v1 panel contains 380 mouse microRNAs described in miRBase v9.1. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
9 GPL8181 Illumina Mouse v2 MicroRNA expression beadchip 656 Illumina Inc. 2009-02-11 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina Mouse v2 MicroRNA expression beadchip, The mouse miRNA v1 panel targets 656 mouse miRNAs (> 96% coverage of miRBase release 12). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
10 GPL6099 Illumina mouse-6 v1.0 expression beadchip 46,005 Illumina Inc. 2007-11-08 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouse-6 v1.0 expression beadchip, The Mouse-6 BeadChip can be used to study expression of over 47,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
11 GPL6105 Illumina mouse-6 v1.1 expression beadchip 46,632 Illumina Inc. 2007-11-08 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouse-6 v1.1 expression beadchip, The MouseWG-6 v1.1 Expression BeadChip contains six wholegenome gene expression arrays allowing six samples to be hybridized to a single chip. BeadChip content was created by combining proven sources, including the Mouse Exonic Evidence Based Oligonucleotide (MEEBO) set, the RIKEN FANTOM 22-5 database, and the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
12 GPL6481 Illumina mouse-6 v1.1 expression beadchip [Array_Address_Id version] 46,643 NCBI/NLM/NIH 2008-02-12 Illumina INc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouse-6 v1.1 expression beadchip [Array_Address_Id version],
13 GPL15943 Illumina mouse-6 v1.1 expression beadchip [TargetID centered version] 34,596 NIH/NIAID 2012-08-15 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouse-6 v1.1 expression beadchip [TargetID centered version], Identical to GPL6105, except centered to the TargetID. The MouseWG-6 v1.1 Expression BeadChip contains six wholegenome gene expression arrays allowing six samples to be hybridized to a single chip. BeadChip content was created by combining proven sources, including the Mouse Exonic Evidence Based Oligonucleotide (MEEBO) set, the RIKEN FANTOM 22-5 database, and the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
14 GPL6568 Illumina mouse-6 v1.1 expression beadchips 46,628 NCBI/NLM/NIH 2008-03-10 Illumina Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouse-6 v1.1 expression beadchips,
15 GPL8389 Illumina Mouse-8 Expression BeadChip 25,697 KIOM 2009-04-03 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina Mouse-8 Expression BeadChip,
16 GPL6753 Illumina mouseRef-8 v1.0 expression beadchip 24,056 German Research Center for Environmental Health 2008-04-18 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouseRef-8 v1.0 expression beadchip, The Mouse-8 BeadChip can be used to study expression of over 24,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip.
17 GPL6100 Illumina mouseRef-8 v1.0 expression beadchip 23,983 Illumina Inc. 2007-11-08 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouseRef-8 v1.0 expression beadchip, The Mouse-8 BeadChip can be used to study expression of over 24,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
18 GPL9974 Illumina mouseRef-8 v1.0a expression beadchip 24,341 Fred Hutchinson Cancer Research Center 2010-01-25 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouseRef-8 v1.0a expression beadchip, The Mouse-8 BeadChip can be used to study expression of over 24,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 8 samples in parallel on a single BeadChip.
19 GPL6103 Illumina mouseRef-8 v1.1 expression beadchip 24,613 Illumina Inc. 2007-11-08 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina mouseRef-8 v1.1 expression beadchip, The MouseRef-8 v1.1 Expression BeadChip contains eight arrays for eight samples. BeadChip content was created by combining proven sources, including the Mouse Exonic Evidence Based Oligonucleotide (MEEBO) set, the RIKEN FANTOM 22-5 database, and the National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database. Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
20 GPL6885 Illumina MouseRef-8 v2.0 expression beadchip 25,697 Illumina Inc. 2008-05-21 Illumina Inc. Mus musculus
Mus musculus		 Bead Array oligonucleotide beads, Illumina MouseRef-8 v2.0 expression beadchip, The MouseRef-8 v2.0 Expression BeadChip offer the most up-to-date content for whole-genome expression profiling in the mouse. Featuring content derived from the National Center for Biotechnology Information Reference Sequence (NCBI RefSeq) database (Build 36, Release 22). Please use the GEO Data Submission Report Plug-in v1.0 for Gene Expression which may be downloaded from https://icom.illumina.com/icom/software.ilmn?id=234 to format the normalized and raw data. These should be submitted as part of a GEOarchive. Instructions for assembling a GEOarchive may be found at http://www.ncbi.nlm.nih.gov/projects/geo/info/spreadsheet.html
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