Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(718)
  SAGE RsaI
(3)
  SAGE Sau3A
(37)
  MPSS
(100)
  GeneChip
(108,928)
  Tiling Array
(2,164)
  cDNA Array
(11,311)
  Oligo Array
(60,928)
  Bead Array
(21,037)
  Protein Array
(0)
  Antibody
(28)
  RT-PCR
(1,166)
  HT-Seq
(17,667)
  Other
(968)
  All
(225,055)
 
  brain
(18,058)
  blood
(14,514)
  connective
(7,942)
  reproductive
(4,503)
  muscular
(7,866)
  digestive
(3,287)
  liver
(12,974)
  lung
(5,211)
  urinary
(3,093)
  endo/exo-crine
(4,663)
  embryo
(4,368)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(3,964)
  unclassified
(18,485)
  all
(108,928)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1050553 cRelvTI 0 University of Canberra 2012-12-10 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) genomic Mus musculus
Mus musculus
unclassified source_name:c-Rel ChIP DNA from stimulated EL4 cells Total genomic DNA from stimulated EL4 cells title:cRelvTI description:test CEL file: cRel 8h 1 mouse promoter 20090209.CEL test CEL file: cRel 8h 2 mouse promoter 20090216.CEL test CEL file: cRel 8h 3 mouse promoter 20090217.CEL ctrl CEL file: Total Input 1 mouse promoter 20090209.CEL ctrl CEL file: Total Input 2 mouse promoter 20090216.CEL ctrl CEL file: Total Input 3mouse promoter 20090217.CEL Significant regions more in c-Rel samples than total input
2 GSM1050554 RelAvTI 0 University of Canberra 2012-12-10 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) genomic Mus musculus
Mus musculus
unclassified source_name:RelA ChIP DNA from stimulated EL4 cells Total genomic DNA from stimulated EL4 cells title:RelAvTI description:test CEL file: p65 2h 1 mouse promoter 20090209.CEL test CEL file: p65 2h 2 mouse promoter 20090216.CEL test CEL file: p65 2h 3 mouse promoter 20090217.CEL ctrl CEL file: Total Input 1 mouse promoter 20090209.CEL ctrl CEL file: Total Input 2 mouse promoter 20090216.CEL ctrl CEL file: Total Input 3mouse promoter 20090217.CEL Significant regions more in ReAl samples than total input
3 GSM1050555 cRelvNoAb 0 University of Canberra 2012-12-10 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) genomic Mus musculus
Mus musculus
unclassified source_name:c-Rel ChIP DNA from stimulated EL4 cells Mock ChIP DNA from stimulated EL4 cells title:cRelvNoAb description:test CEL file: cRel 8h 1 mouse promoter 20090209.CEL test CEL file: cRel 8h 2 mouse promoter 20090216.CEL test CEL file: cRel 8h 3 mouse promoter 20090217.CEL ctrl CEL file: No Antibody 1 mouse promoter 20090209.CEL ctrl CEL file: No Antibody 2 mouse promoter 20090216.CEL ctrl CEL file: No Antibody 3 mouse promoter 20090217.CEL Significant regions more in c-Rel samples than No antibody
4 GSM1050556 RelAvNoAb 0 University of Canberra 2012-12-10 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) genomic Mus musculus
Mus musculus
unclassified source_name:RelA ChIP DNA from stimulated EL4 cells Mock ChIP DNA from stimulated EL4 cells title:RelAvNoAb description:test CEL file: p65 2h 1 mouse promoter 20090209.CEL test CEL file: p65 2h 2 mouse promoter 20090216.CEL test CEL file: p65 2h 3 mouse promoter 20090217.CEL ctrl CEL file: No Antibody 1 mouse promoter 20090209.CEL ctrl CEL file: No Antibody 2 mouse promoter 20090216.CEL ctrl CEL file: No Antibody 3 mouse promoter 20090217.CEL Significant regions more in c-Rel samples than No antibody
5 GSM1050557 NoAbvTI 0 University of Canberra 2012-12-10 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) genomic Mus musculus
Mus musculus
unclassified source_name:Mock ChIP DNA from stimulated EL4 cells Total genomic DNA from stimulated EL4 cells title:NoAbvTI description:test CEL file: No Antibody 1 mouse promoter 20090209.CEL test CEL file: No Antibody 2 mouse promoter 20090216.CEL test CEL file: No Antibody 3 mouse promoter 20090217.CEL ctrl CEL file: Total Input 1 mouse promoter 20090209.CEL ctrl CEL file: Total Input 2 mouse promoter 20090216.CEL ctrl CEL file: Total Input 3mouse promoter 20090217.CEL Significant regions more in No antibody samples than total input
6 GSM1062881 ZKam-OVX-01 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-01
7 GSM1062882 ZKam-OVX-02 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-02
8 GSM1062883 ZKam-OVX-03 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-03
9 GSM1062884 ZKam-OVX-04 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-04
10 GSM1062885 ZKam-OVX-05 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-05
11 GSM1062886 ZKam-OVX-06 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-06
12 GSM1062887 ZKam-OVX-07 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-07
13 GSM1062888 ZKam-OVX-08 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-08
14 GSM1062889 ZKam-OVX-09 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-09
15 GSM1062890 ZKam-OVX-10 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-10
16 GSM1062891 ZKam-OVX-01 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-01 description:100k probes generated in silico Used the normalized M-values from the E2 data (GSE43460) to generate normalized M-values for 40 simulated arrays (see GSE43462-linked file)
17 GSM1062892 ZKam-OVX-02 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-02 description:100k probes generated in silico Used the normalized M-values from the E2 data (GSE43460) to generate normalized M-values for 40 simulated arrays (see GSE43462-linked file)
18 GSM1062893 ZKam-OVX-03 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-03 description:100k probes generated in silico Used the normalized M-values from the E2 data (GSE43460) to generate normalized M-values for 40 simulated arrays (see GSE43462-linked file)
19 GSM1062894 ZKam-OVX-04 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Vehicle 30 days title:ZKam-OVX-04 description:100k probes generated in silico Used the normalized M-values from the E2 data (GSE43460) to generate normalized M-values for 40 simulated arrays (see GSE43462-linked file)
20 GSM1062895 ZKam-OVX-05 0 Johns Hopkins University 2013-01-11 [GeneChip] [Mm_PromPR] Affymetrix Mouse Promoter 1.0R Array (GPL5811) RNA Mus musculus
Mus musculus
unclassified source_name:Estradiol 30 days title:ZKam-OVX-05 description:100k probes generated in silico Used the normalized M-values from the E2 data (GSE43460) to generate normalized M-values for 40 simulated arrays (see GSE43462-linked file)
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