Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(810)		   Primates
(6)		   Rodents
(476)		   Mammals
(46)		   Vertebrates
(47)		   Invertebrates
(302)		   Plants
(266)		   Bacteria
(117)		   Viruses
(1)		   Phages
(0)		   Unclassified
(8)		   All
(2,081)		  
  SAGE NlaIII
(4)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(0)		   GeneChip
(219)		   Tiling Array
(6)		   cDNA Array
(3)		   Oligo Array
(108)		   Bead Array
(65)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(11)		   HT-Seq
(58)		   Other
(1)		   All
(476)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Histone H3 lysine 9 di-methylation as an epigenetic signature of the interferon response (GSE24826) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Rockefeller University 2010-10-20 Mus musculus
Mus musculus		 33
(0 x 33) 		9 24 by_platform
by_series
2 A chromatin-modifying function of JNK during stem cell differentiation (GSE25532) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Friedrich Miescher Institute for Biomedical Research 2010-11-22 Mus musculus
Mus musculus		 33
(0 x 33) 		22 11 by_platform
by_series
3 A chromatin-modifying function of JNK during embryonic stem cell differentiation (GSE25533) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Friedrich Miescher Institute for Biomedical Research 2010-11-22 Mus musculus
Mus musculus		 33
(0 x 33) 		22 11 by_platform
by_series
4 Polycomb Protein Ezh1 Promotes RNA Polymerase II Elongation (GSE25549) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) National Institutes of Health 2010-11-22 Mus musculus
Mus musculus		 28
(0 x 28) 		28 by_platform
by_series
5 Widespread targeted chromatin remodeling during the initial phase of somatic cell reprogramming (GSE26100) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Broad Institute of Harvard and MIT 2010-12-16 Mus musculus
Mus musculus		 26
(0 x 26) 		26 by_platform
by_series
6 Genome-wide remodeling of the epigenetic landscape during myogenic differentiation (GSE25308) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) NYU Langone Medical Center 2010-11-12 Mus musculus
Mus musculus		 22
(0 x 22) 		22 by_platform
by_series
7 Widespread targeted chromatin remodeling during the initial phase of somatic cell reprogramming [ChIP-Seq] (GSE26099) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Broad Institute of Harvard and MIT 2010-12-16 Mus musculus
Mus musculus		 22
(0 x 22) 		22 by_platform
by_series
8 Initiation Pausing of 80S Ribosome on mRNA Is Governed by 5'UTR and Responsive to mTORC1 Signaling (RNA-Seq) (GSE25626) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) Cornell University 2010-11-27 Mus musculus
Mus musculus		 21
(0 x 21) 		21 by_platform
by_series
9 Initiation Pausing of 80S Ribosome on mRNA Is Governed by 5’UTR and Responsive to mTORC1 Signaling (GSE25627) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) Cornell University 2010-11-27 Mus musculus
Mus musculus		 18
(0 x 18) 		18 by_platform
by_series
10 Diurnal changes of HDAC3, Rev-erbα, NCoR and Pol II recruitment to the mouse liver genome and of H3K9Ac (GSE26345) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Dana-Farber Cancer Institute 2010-12-29 Mus musculus
Mus musculus		 18
(0 x 18) 		18 by_platform
by_series
11 Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (ChIP/DIP-Seq data) (GSE24841) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) University of Copenhagen 2010-10-20 Mus musculus
Mus musculus		 17
(0 x 17) 		17 by_platform
by_series
12 Tet1 and hydroxymethylcytosine in transcription and DNA methylation fidelity (GSE24843) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) University of Copenhagen 2010-10-20 Mus musculus
Mus musculus		 17
(0 x 17) 		17 by_platform
by_series
13 Selective chemical labeling reveals intragenic enrichment of 5-hydroxymethylcytosine in mouse cerebellum (GSE25398) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Emory University 2010-11-15 Mus musculus
Mus musculus		 13
(0 x 13) 		13 by_platform
by_series
14 ChIP-Seq reveals regulation of the heterochromatic mark, H3K9me3, in NAc following repeated cocaine administration (GSE24850) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Mount Sinai School of Medicine 2010-10-21 Mus musculus
Mus musculus		 11
(0 x 11) 		11 by_platform
by_series
15 FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing. (GSE24622) [HT Sequencing] AB SOLiD System 3.0 (Mus musculus) (GPL9318) University of California, Santa Cruz 2010-10-11 Mus musculus
Mus musculus		 10
(0 x 10) 		10 by_platform
by_series
16 Progressive epigenetic changes in milk protein gene loci during functional differentiation of the mammary gland: ChIP-Seq part I (GSE25105) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Baylor College of Medicine 2010-11-03 Mus musculus
Mus musculus		 10
(0 x 10) 		4 6 by_platform
by_series
17 Cell Type-Specific DNA Methylation at Intragenic CpG Islands in the Immune System (MAP-Seq and ChIP-Seq data) (GSE25688) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) The University of Edinburgh 2010-11-29 Mus musculus
Mus musculus		 10
(0 x 10) 		10 by_platform
by_series
18 Cell Type-Specific DNA Methylation at Intragenic CpG Islands in the Immune System (GSE25689) [HT Sequencing] Illumina Genome Analyzer (Mus musculus) (GPL9185) The University of Edinburgh 2010-11-29 Mus musculus
Mus musculus		 10
(0 x 10) 		10 by_platform
by_series
19 ChIP-Seq of Myf5, MyoD, Snai1, HDAC1, HDAC2, E47 and empty vector controls in mouse skeletal myoblasts or myotubes (GSE24852) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Ontario Genomics Innovation Centre (OGIC) 2010-10-21 Mus musculus
Mus musculus		 9
(0 x 9) 		2 7 by_platform
by_series
20 Snail regulates MyoD binding-site occupancy to direct enhancer switching and differentiation-specific transcription in myogenesis (GSE24904) [HT Sequencing] Illumina Genome Analyzer II (Mus musculus) (GPL9250) Ontario Genomics Innovation Centre (OGIC) 2010-10-25 Mus musculus
Mus musculus		 9
(0 x 9) 		2 7 by_platform
by_series
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